C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, erythrocytic
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556626 SPTB-001 ENSG00000070182 9606 - 14:64746283-64879883 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLungMusclePlacentaENST00000556626
Transcript ID Brain Breast Heart Lung Muscle Placenta
ENST00000556626 1.728±0.00 0.582±0.00 7.507±5.76 0.845±0.00 71.867±0.00 1.583±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010L CIL_00010L_0001 CGP 14:64704102-64879883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS:IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006779 IEA porphyrin-containing compound biosynthetic process
GO:0007009 IEA plasma membrane organization
GO:0007411 TAS axon guidance
GO:0008091 IEA spectrin
GO:0009986 IDA cell surface
GO:0014731 IDA spectrin-associated cytoskeleton
GO:0015629 TAS actin cytoskeleton
GO:0016020 IEA membrane
GO:0030097 IEA hemopoiesis
GO:0030506 IPI ankyrin binding
GO:0030863 IEA cortical cytoskeleton
GO:0031235 TAS intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0051015 IDA actin filament binding
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021458 Sptb-001 protein_coding Mus_musculus 0 8106
ENSMUST00000166101 Sptb-002 protein_coding Mus_musculus 0 7374
ENSDART00000098492 protein_coding Danio_rerio 0 804
ENSMUST00000170532 Sptb-004 retained_intron Mus_musculus 0 479

Loading