C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070526 ST6GALNAC1 9606 - 17:76624761-76643838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000156626 ST6GALNAC1-001 76624763-76643838 protein_coding
  ENST00000359088 ST6GALNAC1-002 76624763-76643693 nonsense_mediated_decay
  ENST00000585633 ST6GALNAC1-008 76625125-76626391 nonsense_mediated_decay
  ENST00000588375 ST6GALNAC1-009 76625648-76627112 retained_intron
  ENST00000589004 ST6GALNAC1-011 76626006-76629234 processed_transcript
  ENST00000589813 ST6GALNAC1-005 76629395-76643660 nonsense_mediated_decay
  ENST00000589992 ST6GALNAC1-006 76637471-76643660 protein_coding
  ENST00000590784 ST6GALNAC1-010 76625850-76627167 protein_coding
  ENST00000590878 ST6GALNAC1-003 76627098-76643774 processed_transcript
  ENST00000590915 ST6GALNAC1-007 76633595-76643757 processed_transcript
  ENST00000592042 ST6GALNAC1-004 76624761-76643786 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000156626ENST00000359088ENST00000585633ENST00000589004ENST00000589813ENST00000590784ENST00000590878ENST00000590915ENST00000592042
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000156626 N/A N/A N/A 5.381±0.00 12.454±0.00 N/A N/A N/A N/A N/A 1.264±0.51 2.251±1.23 1.212±0.00
ENST00000359088 0.332±0.00 0.307±0.00 0.478±0.00 0.748±0.00 6.531±0.00 0.232±0.20 N/A N/A 4.152±0.00 N/A 1.768±1.25 1.701±1.49 0.700±0.32
ENST00000585633 0.595±0.00 N/A 0.731±0.00 N/A 13.657±0.00 0.950±0.00 0.072±0.00 0.214±0.00 N/A 0.515±0.00 6.640±0.00 2.343±0.00 1.708±0.00
ENST00000589004 N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A
ENST00000589813 N/A N/A 0.929±0.00 N/A N/A 0.330±0.00 N/A N/A N/A 0.500±0.00 N/A N/A N/A
ENST00000590784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.769±0.00 2.313±0.00 3.698±0.00
ENST00000590878 N/A 0.504±0.00 0.206±0.00 N/A N/A 0.113±0.00 0.207±0.00 0.154±0.00 N/A N/A N/A 0.628±0.00 0.564±0.00
ENST00000590915 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A
ENST00000592042 0.286±0.00 N/A 0.365±0.00 0.351±0.00 3.291±0.00 N/A N/A N/A 1.020±0.00 N/A 0.628±0.27 0.241±0.00 0.828±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000194 CIL_000194_0001 CGP 17:76563710-76643838
CIL_0002X6 CIL_0002X6_0001 CGP 17:76624761-76711016

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001665 IEA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0008373 NAS:IEA sialyltransferase activity
GO:0009312 IEA oligosaccharide biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043814 st6galnac1.1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, tandem duplicate protein_coding Danio_rerio
ENSDARG00000043816 st6galnac1.2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, tandem duplicate protein_coding Danio_rerio
ENSMUSG00000009588 St6galnac1 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein_coding Mus_musculus

Loading