C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000194_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070731-ENSG00000070526 CGP 9606 17:76563710-76643838
GeneTranscriptPositionBiotype
ENSG00000070526 (ST6GALNAC1)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 		ENST00000156626 (ST6GALNAC1-001) 76624763-76643838 protein_coding
ENST00000359088 (ST6GALNAC1-002) 76624763-76643693 nonsense_mediated_decay
ENST00000585633 (ST6GALNAC1-008) 76625125-76626391 nonsense_mediated_decay
ENST00000588375 (ST6GALNAC1-009) 76625648-76627112 retained_intron
ENST00000589004 (ST6GALNAC1-011) 76626006-76629234 processed_transcript
ENST00000589813 (ST6GALNAC1-005) 76629395-76643660 nonsense_mediated_decay
ENST00000589992 (ST6GALNAC1-006) 76637471-76643660 protein_coding
ENST00000590784 (ST6GALNAC1-010) 76625850-76627167 protein_coding
ENST00000590878 (ST6GALNAC1-003) 76627098-76643774 processed_transcript
ENST00000590915 (ST6GALNAC1-007) 76633595-76643757 processed_transcript
ENST00000592042 (ST6GALNAC1-004) 76624761-76643786 nonsense_mediated_decay
ENSG00000070731 (ST6GALNAC2)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 		ENST00000225276 (ST6GALNAC2-001) 76565379-76586128 protein_coding
ENST00000585390 (ST6GALNAC2-011) 76566106-76570633 nonsense_mediated_decay
ENST00000585736 (ST6GALNAC2-006) 76573342-76586030 nonsense_mediated_decay
ENST00000586520 (ST6GALNAC2-009) 76570898-76585857 processed_transcript
ENST00000588005 (ST6GALNAC2-004) 76570910-76586956 processed_transcript
ENST00000588120 (ST6GALNAC2-007) 76570579-76585856 nonsense_mediated_decay
ENST00000588920 (ST6GALNAC2-012) 76566133-76573349 protein_coding
ENST00000589997 (ST6GALNAC2-003) 76563710-76570544 retained_intron
ENST00000592508 (ST6GALNAC2-008) 76574481-76578983 retained_intron
ENST00000592979 (ST6GALNAC2-010) 76568717-76571142 retained_intron
CIL_000194_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057286-ENSMUSG00000009588 CGP 10090 11:116675303-116775507
GeneTranscriptPositionBiotype
ENSMUSG00000009588 (St6galnac1)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 		ENSMUST00000009732 (St6galnac1-001) 116765025-116775507 protein_coding
ENSMUSG00000020812 (1810032O08Rik)
RIKEN cDNA 1810032O08 gene 		ENSMUST00000106378 (1810032O08Rik-003) 116671669-116675798 protein_coding
ENSMUST00000131260 (1810032O08Rik-002) 116672692-116675799 nonsense_mediated_decay
ENSMUST00000134818 (1810032O08Rik-006) 116671881-116673974 protein_coding
ENSMUST00000139934 (1810032O08Rik-001) 116671660-116675798 nonsense_mediated_decay
ENSMUST00000142834 (1810032O08Rik-008) 116671669-116675795 nonsense_mediated_decay
ENSMUST00000144049 (1810032O08Rik-005) 116671708-116674587 protein_coding
ENSMUST00000153405 (1810032O08Rik-004) 116671696-116672622 retained_intron
ENSMUSG00000056032 (BC018473)
cDNA sequence BC018473 		ENSMUST00000132056 (BC018473-003) 116752169-116755842 antisense
ENSMUST00000145570 (BC018473-004) 116752349-116755842 antisense
ENSMUST00000147508 (BC018473-002) 116752963-116755842 antisense
ENSMUST00000156293 (BC018473-001) 116752167-116759373 antisense
ENSMUSG00000057286 (St6galnac2)
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 		ENSMUST00000079545 (St6galnac2-001) 116675303-116694868 protein_coding
ENSMUST00000123236 (St6galnac2-004) 116681683-116684816 processed_transcript
ENSMUST00000129236 (St6galnac2-005) 116684916-116685917 processed_transcript
ENSMUST00000135771 (St6galnac2-003) 116675889-116679678 processed_transcript
ENSMUST00000144398 (St6galnac2-002) 116677483-116681290 processed_transcript
ENSMUST00000145441 (St6galnac2-006) 116689967-116694609 processed_transcript
ENSMUSG00000078586 (Gm11735)
predicted gene 11735 		ENSMUST00000106377 (Gm11735-001) 116739062-116749833 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000194_0001ENSG00000070526ENST00000156626ENST00000359088ENST00000585633ENST00000588375ENST00000589004ENST00000589813ENST00000589992ENST00000590784ENST00000590878ENST00000590915ENST00000592042ENSG00000070731ENST00000225276ENST00000585390ENST00000585736ENST00000586520ENST00000588005ENST00000588120ENST00000588920ENST00000589997ENST00000592508ENST00000592979CIL_000194_0002ENSMUSG00000009588ENSMUST00000009732ENSMUSG00000020812ENSMUST00000106378ENSMUST00000131260ENSMUST00000134818ENSMUST00000139934ENSMUST00000142834ENSMUST00000144049ENSMUST00000153405ENSMUSG00000056032ENSMUST00000132056ENSMUST00000145570ENSMUST00000147508ENSMUST00000156293ENSMUSG00000057286ENSMUST00000079545ENSMUST00000123236ENSMUST00000129236ENSMUST00000135771ENSMUST00000144398ENSMUST00000145441ENSMUSG00000078586ENSMUST00000106377
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000194_0001ENSG00000070526ENST00000156626ENST00000359088ENST00000585633ENST00000589004ENST00000589813ENST00000590784ENST00000590878ENST00000590915ENST00000592042ENSG00000070731ENST00000225276ENST00000589997CIL_000194_0002ENSMUSG00000009588ENSMUST00000009732ENSMUSG00000020812ENSMUST00000106378ENSMUST00000139934ENSMUST00000144049ENSMUSG00000056032ENSMUST00000132056ENSMUST00000145570ENSMUST00000147508ENSMUST00000156293ENSMUSG00000057286ENSMUST00000079545ENSMUST00000135771ENSMUST00000144398ENSMUST00000145441ENSMUSG00000078586ENSMUST00000106377
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070526 ENST00000156626 N/A N/A N/A N/A 5.381±0.00 12.454±0.00 N/A N/A N/A N/A N/A 1.264±0.51 2.251±1.23 1.212±0.00
ENST00000359088 0.332±0.00 0.307±0.00 N/A 0.478±0.00 0.748±0.00 6.531±0.00 0.232±0.20 N/A N/A 4.152±0.00 N/A 1.768±1.25 1.701±1.49 0.700±0.32
ENST00000585633 0.595±0.00 N/A N/A 0.731±0.00 N/A 13.657±0.00 0.950±0.00 0.072±0.00 0.214±0.00 N/A 0.515±0.00 6.640±0.00 2.343±0.00 1.708±0.00
ENST00000588375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589004 N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A
ENST00000589813 N/A N/A N/A 0.929±0.00 N/A N/A 0.330±0.00 N/A N/A N/A 0.500±0.00 N/A N/A N/A
ENST00000589992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.769±0.00 2.313±0.00 3.698±0.00
ENST00000590878 N/A 0.504±0.00 N/A 0.206±0.00 N/A N/A 0.113±0.00 0.207±0.00 0.154±0.00 N/A N/A N/A 0.628±0.00 0.564±0.00
ENST00000590915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00 N/A N/A N/A
ENST00000592042 0.286±0.00 N/A N/A 0.365±0.00 0.351±0.00 3.291±0.00 N/A N/A N/A 1.020±0.00 N/A 0.628±0.27 0.241±0.00 0.828±0.00
ENSG00000070731 ENST00000225276 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.667±0.00 N/A N/A N/A 25.660±0.00
ENST00000585390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585736 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.430±0.00
ENST00000592508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009588 ENSMUST00000009732 0.079±0.04 0.149±0.08 0.007±0.00 0.009±0.00 0.277±0.09 3.581±1.39 0.069±0.00 0.222±0.14 0.011±0.01 0.094±0.02 N/A 0.078±0.04 0.014±0.01 0.093±0.05
ENSMUSG00000020812 ENSMUST00000106378 N/A N/A N/A 1.849±0.00 N/A N/A N/A N/A 1.339±1.23 N/A 0.510±0.04 3.427±0.04 N/A N/A
ENSMUST00000131260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139934 N/A 8.306±1.77 N/A 5.305±0.96 N/A N/A N/A N/A 3.989±3.13 N/A N/A 13.355±2.61 N/A N/A
ENSMUST00000142834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144049 N/A 8.554±0.44 N/A N/A N/A N/A N/A N/A 0.992±0.37 N/A N/A 7.797±0.39 N/A N/A
ENSMUST00000153405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056032 ENSMUST00000132056 0.615±0.20 0.299±0.02 N/A N/A 4.174±2.00 N/A 0.368±0.05 2.015±0.67 0.328±0.00 2.199±1.03 N/A 0.254±0.13 0.006±0.00 0.991±0.89
ENSMUST00000145570 N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A 0.330±0.20 0.004±0.00 0.597±0.54
ENSMUST00000147508 0.424±0.20 0.236±0.02 N/A 0.027±0.00 2.238±0.32 N/A 0.209±0.02 0.704±0.10 0.074±0.01 1.150±0.43 N/A 0.086±0.01 N/A N/A
ENSMUST00000156293 0.418±0.25 0.579±0.25 0.002±0.00 0.020±0.01 0.971±0.00 0.641±0.35 0.125±0.04 0.374±0.11 0.102±0.09 N/A 0.008±0.00 0.130±0.11 0.005±0.00 0.043±0.00
ENSMUSG00000057286 ENSMUST00000079545 6.875±2.13 3.340±0.68 13.023±1.17 0.854±0.21 5.610±1.31 14.355±4.13 2.414±0.55 36.765±2.69 0.664±0.35 18.925±3.54 0.770±0.44 3.327±0.67 12.339±3.09 N/A
ENSMUST00000123236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129236 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135771 N/A N/A N/A 0.347±0.00 1.364±0.00 N/A N/A N/A N/A N/A 0.279±0.03 0.994±0.00 3.136±0.41 N/A
ENSMUST00000144398 3.102±0.00 0.767±0.00 N/A N/A 2.538±0.31 3.839±0.66 1.199±0.30 N/A N/A 5.823±2.00 0.913±0.19 1.756±0.05 N/A 115.821±0.00
ENSMUST00000145441 N/A 28.215±8.23 N/A N/A N/A 30.735±2.31 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078586 ENSMUST00000106377 0.072±0.02 0.084±0.04 0.005±0.00 0.007±0.00 0.141±0.06 0.613±0.39 0.026±0.01 0.078±0.05 0.038±0.01 0.091±0.01 N/A 0.082±0.02 0.128±0.00 0.042±0.02

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