Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000194_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000070731-ENSG00000070526	CGP	9606	17:76563710-76643838
Gene	Transcript	Position	Biotype
ENSG00000070526 (ST6GALNAC1) ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	ENST00000156626 (ST6GALNAC1-001)	76624763-76643838	protein_coding
	ENST00000359088 (ST6GALNAC1-002)	76624763-76643693	nonsense_mediated_decay
	ENST00000585633 (ST6GALNAC1-008)	76625125-76626391	nonsense_mediated_decay
	ENST00000588375 (ST6GALNAC1-009)	76625648-76627112	retained_intron
	ENST00000589004 (ST6GALNAC1-011)	76626006-76629234	processed_transcript
	ENST00000589813 (ST6GALNAC1-005)	76629395-76643660	nonsense_mediated_decay
	ENST00000589992 (ST6GALNAC1-006)	76637471-76643660	protein_coding
	ENST00000590784 (ST6GALNAC1-010)	76625850-76627167	protein_coding
	ENST00000590878 (ST6GALNAC1-003)	76627098-76643774	processed_transcript
	ENST00000590915 (ST6GALNAC1-007)	76633595-76643757	processed_transcript
	ENST00000592042 (ST6GALNAC1-004)	76624761-76643786	nonsense_mediated_decay
ENSG00000070731 (ST6GALNAC2) ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	ENST00000225276 (ST6GALNAC2-001)	76565379-76586128	protein_coding
	ENST00000585390 (ST6GALNAC2-011)	76566106-76570633	nonsense_mediated_decay
	ENST00000585736 (ST6GALNAC2-006)	76573342-76586030	nonsense_mediated_decay
	ENST00000586520 (ST6GALNAC2-009)	76570898-76585857	processed_transcript
	ENST00000588005 (ST6GALNAC2-004)	76570910-76586956	processed_transcript
	ENST00000588120 (ST6GALNAC2-007)	76570579-76585856	nonsense_mediated_decay
	ENST00000588920 (ST6GALNAC2-012)	76566133-76573349	protein_coding
	ENST00000589997 (ST6GALNAC2-003)	76563710-76570544	retained_intron
	ENST00000592508 (ST6GALNAC2-008)	76574481-76578983	retained_intron
	ENST00000592979 (ST6GALNAC2-010)	76568717-76571142	retained_intron

CIL_000194_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000057286-ENSMUSG00000009588	CGP	10090	11:116675303-116775507
Gene	Transcript	Position	Biotype
ENSMUSG00000009588 (St6galnac1) ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	ENSMUST00000009732 (St6galnac1-001)	116765025-116775507	protein_coding
ENSMUSG00000020812 (1810032O08Rik) RIKEN cDNA 1810032O08 gene	ENSMUST00000106378 (1810032O08Rik-003)	116671669-116675798	protein_coding
	ENSMUST00000131260 (1810032O08Rik-002)	116672692-116675799	nonsense_mediated_decay
	ENSMUST00000134818 (1810032O08Rik-006)	116671881-116673974	protein_coding
	ENSMUST00000139934 (1810032O08Rik-001)	116671660-116675798	nonsense_mediated_decay
	ENSMUST00000142834 (1810032O08Rik-008)	116671669-116675795	nonsense_mediated_decay
	ENSMUST00000144049 (1810032O08Rik-005)	116671708-116674587	protein_coding
	ENSMUST00000153405 (1810032O08Rik-004)	116671696-116672622	retained_intron
ENSMUSG00000056032 (BC018473) cDNA sequence BC018473	ENSMUST00000132056 (BC018473-003)	116752169-116755842	antisense
	ENSMUST00000145570 (BC018473-004)	116752349-116755842	antisense
	ENSMUST00000147508 (BC018473-002)	116752963-116755842	antisense
	ENSMUST00000156293 (BC018473-001)	116752167-116759373	antisense
ENSMUSG00000057286 (St6galnac2) ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	ENSMUST00000079545 (St6galnac2-001)	116675303-116694868	protein_coding
	ENSMUST00000123236 (St6galnac2-004)	116681683-116684816	processed_transcript
	ENSMUST00000129236 (St6galnac2-005)	116684916-116685917	processed_transcript
	ENSMUST00000135771 (St6galnac2-003)	116675889-116679678	processed_transcript
	ENSMUST00000144398 (St6galnac2-002)	116677483-116681290	processed_transcript
	ENSMUST00000145441 (St6galnac2-006)	116689967-116694609	processed_transcript
ENSMUSG00000078586 (Gm11735) predicted gene 11735	ENSMUST00000106377 (Gm11735-001)	116739062-116749833	unprocessed_pseudogene

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000070526

ENST00000156626

N/A

5.381±0.00

12.454±0.00

N/A

1.264±0.51

2.251±1.23

1.212±0.00

ENST00000359088

0.332±0.00

0.307±0.00

N/A

0.478±0.00

0.748±0.00

6.531±0.00

0.232±0.20

N/A

4.152±0.00

N/A

1.768±1.25

1.701±1.49

0.700±0.32

ENST00000585633

0.595±0.00

N/A

0.731±0.00

N/A

13.657±0.00

0.950±0.00

0.072±0.00

0.214±0.00

N/A

0.515±0.00

6.640±0.00

2.343±0.00

1.708±0.00

ENST00000588375

N/A

ENST00000589004

N/A

0.106±0.00

N/A

ENST00000589813

N/A

0.929±0.00

N/A

0.330±0.00

N/A

0.500±0.00

N/A

ENST00000589992

N/A

ENST00000590784

N/A

12.769±0.00

2.313±0.00

3.698±0.00

ENST00000590878

N/A

0.504±0.00

N/A

0.206±0.00

N/A

0.113±0.00

0.207±0.00

0.154±0.00

N/A

0.628±0.00

0.564±0.00

ENST00000590915

N/A

0.310±0.00

N/A

ENST00000592042

0.286±0.00

N/A

0.365±0.00

0.351±0.00

3.291±0.00

N/A

1.020±0.00

N/A

0.628±0.27

0.241±0.00

0.828±0.00

ENSG00000070731

ENST00000225276

N/A

2.667±0.00

N/A

25.660±0.00

N/A

N/A

N/A

N/A

N/A

N/A

N/A

2.430±0.00

ENST00000592508

N/A

ENST00000592979

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000009588

ENSMUST00000009732

0.079±0.04

0.149±0.08

0.007±0.00

0.009±0.00

0.277±0.09

3.581±1.39

0.069±0.00

0.222±0.14

0.011±0.01

0.094±0.02

N/A

0.078±0.04

0.014±0.01

0.093±0.05

ENSMUSG00000020812

ENSMUST00000106378

N/A

1.849±0.00

N/A

1.339±1.23

N/A

0.510±0.04

3.427±0.04

N/A

ENSMUST00000131260

N/A

ENSMUST00000134818

N/A

ENSMUST00000139934

N/A

8.306±1.77

N/A

5.305±0.96

N/A

3.989±3.13

N/A

13.355±2.61

N/A

ENSMUST00000142834

N/A

ENSMUST00000144049

N/A

8.554±0.44

N/A

0.992±0.37

N/A

7.797±0.39

N/A

ENSMUST00000153405

N/A

ENSMUSG00000056032

ENSMUST00000132056

0.615±0.20

0.299±0.02

N/A

4.174±2.00

N/A

0.368±0.05

2.015±0.67

0.328±0.00

2.199±1.03

N/A

0.254±0.13

0.006±0.00

0.991±0.89

ENSMUST00000145570

N/A

0.069±0.00

N/A

0.330±0.20

0.004±0.00

0.597±0.54

ENSMUST00000147508

0.424±0.20

0.236±0.02

N/A

0.027±0.00

2.238±0.32

N/A

0.209±0.02

0.704±0.10

0.074±0.01

1.150±0.43

N/A

0.086±0.01

N/A

ENSMUST00000156293

0.418±0.25

0.579±0.25

0.002±0.00

0.020±0.01

0.971±0.00

0.641±0.35

0.125±0.04

0.374±0.11

0.102±0.09

N/A

0.008±0.00

0.130±0.11

0.005±0.00

0.043±0.00

ENSMUSG00000057286

ENSMUST00000079545

6.875±2.13

3.340±0.68

13.023±1.17

0.854±0.21

5.610±1.31

14.355±4.13

2.414±0.55

36.765±2.69

0.664±0.35

18.925±3.54

0.770±0.44

3.327±0.67

12.339±3.09

N/A

ENSMUST00000123236

N/A

ENSMUST00000129236

N/A

ENSMUST00000135771

N/A

0.347±0.00

1.364±0.00

N/A

0.279±0.03

0.994±0.00

3.136±0.41

N/A

ENSMUST00000144398

3.102±0.00

0.767±0.00

N/A

2.538±0.31

3.839±0.66

1.199±0.30

N/A

5.823±2.00

0.913±0.19

1.756±0.05

N/A

115.821±0.00

ENSMUST00000145441

N/A

28.215±8.23

N/A

30.735±2.31

N/A

ENSMUSG00000078586

ENSMUST00000106377

0.072±0.02

0.084±0.04

0.005±0.00

0.007±0.00

0.141±0.06

0.613±0.39

0.026±0.01

0.078±0.05

0.038±0.01

0.091±0.01

N/A

0.082±0.02

0.128±0.00

0.042±0.02

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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