C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choline O-acetyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070748 CHAT 9606 + 10:49609095-49665104 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337653 CHAT-001 49614037-49665104 protein_coding
  ENST00000339797 CHAT-007 49609095-49665104 protein_coding
  ENST00000351556 CHAT-201 49613108-49665104 protein_coding
  ENST00000395559 CHAT-202 49613108-49665104 protein_coding
  ENST00000395562 CHAT-203 49614037-49665104 protein_coding
  ENST00000460699 CHAT-004 49613108-49625488 processed_transcript
  ENST00000466590 CHAT-002 49614037-49665104 nonsense_mediated_decay
  ENST00000481336 CHAT-006 49613119-49619795 processed_transcript
  ENST00000490270 CHAT-003 49615757-49619856 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartPlacentaTestisENST00000337653ENST00000339797ENST00000351556ENST00000395559
Transcript ID Adipose Colon Heart Placenta Testis
ENST00000337653 N/A 0.069±0.00 N/A N/A N/A
ENST00000339797 0.010±0.00 0.117±0.00 N/A N/A 0.102±0.00
ENST00000351556 N/A N/A N/A 0.285±0.00 N/A
ENST00000395559 N/A 0.146±0.00 0.045±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084A CIL_00084A_0001 VISTA 10:49095759-49697208
CIL_0006F1 CIL_0006F1_0002 CGP 10:49609095-49665104

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004102 IEA choline O-acetyltransferase activity
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007274 IEA neuromuscular synaptic transmission
GO:0007517 IEA muscle organ development
GO:0007529 IEA establishment of synaptic specificity at neuromuscular junction
GO:0007622 IEA rhythmic behavior
GO:0007628 IEA adult walking behavior
GO:0016358 IEA dendrite development
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0030182 IEA neuron differentiation
GO:0030424 IEA axon
GO:0042136 IEA neurotransmitter biosynthetic process
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043179 IEA rhythmic excitation
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015854 chat choline acetyltransferase protein_coding Danio_rerio
ENSMUSG00000021919 Chat choline acetyltransferase protein_coding Mus_musculus

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