C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006F1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000015854-ENSDARG00000006356 CGP 7955 13:29632961-29648056
GeneTranscriptPositionBiotype
ENSDARG00000006356 (slc18a3a)
solute carrier family 18 (vesicular acetylcholine), member 3a 		ENSDART00000026765 (slc18a3a-001) 29645651-29648056 protein_coding
ENSDARG00000015854 (chat)
choline acetyltransferase 		ENSDART00000024225 (chat-201) 29632961-29644423 protein_coding
ENSDART00000150228 (chat-001) 29632961-29644933 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006F1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070748-ENSG00000070748 CGP 9606 10:49609095-49665104
GeneTranscriptPositionBiotype
ENSG00000070748 (CHAT)
choline O-acetyltransferase 		ENST00000337653 (CHAT-001) 49614037-49665104 protein_coding
ENST00000339797 (CHAT-007) 49609095-49665104 protein_coding
ENST00000351556 (CHAT-201) 49613108-49665104 protein_coding
ENST00000395559 (CHAT-202) 49613108-49665104 protein_coding
ENST00000395562 (CHAT-203) 49614037-49665104 protein_coding
ENST00000460699 (CHAT-004) 49613108-49625488 processed_transcript
ENST00000466590 (CHAT-002) 49614037-49665104 nonsense_mediated_decay
ENST00000481336 (CHAT-006) 49613119-49619795 processed_transcript
ENST00000490270 (CHAT-003) 49615757-49619856 processed_transcript
ENSG00000187714 (SLC18A3)
solute carrier family 18 (vesicular acetylcholine transporter), member 3 		ENST00000374115 (SLC18A3-001) 49610301-49612720 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006F1_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021919-ENSMUSG00000021919 CGP 10090 14:32408203-32465909
GeneTranscriptPositionBiotype
ENSMUSG00000021919 (Chat)
choline acetyltransferase 		ENSMUST00000070125 (Chat-201) 32408203-32465909 protein_coding
ENSMUSG00000097794 (Gm2990)
predicted gene 2990 		ENSMUST00000180662 (Gm2990-201) 32465042-32483539 lincRNA
ENSMUSG00000100241 (Slc18a3)
solute carrier family 18 (vesicular monoamine), member 3 		ENSMUST00000191501 (Slc18a3-001) 32462438-32464850 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisCIL_0006F1_0001ENSDARG00000006356ENSDART00000026765ENSDARG00000015854ENSDART00000024225ENSDART00000150228CIL_0006F1_0002ENSG00000070748ENST00000337653ENST00000339797ENST00000351556ENST00000395559ENST00000395562ENST00000460699ENST00000466590ENST00000481336ENST00000490270ENSG00000187714ENST00000374115CIL_0006F1_0003ENSMUSG00000021919ENSMUST00000070125ENSMUSG00000097794ENSMUST00000180662ENSMUSG00000100241ENSMUST00000191501
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisCIL_0006F1_0001ENSDARG00000006356ENSDART00000026765ENSDARG00000015854ENSDART00000024225ENSDART00000150228CIL_0006F1_0002ENSG00000070748ENST00000337653ENST00000339797ENST00000351556ENST00000395559ENSG00000187714ENST00000374115CIL_0006F1_0003ENSMUSG00000021919ENSMUST00000070125ENSMUSG00000097794ENSMUST00000180662ENSMUSG00000100241ENSMUST00000191501
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSDARG00000006356 ENSDART00000026765 N/A N/A N/A 4.479±0.93 N/A N/A 0.241±0.10 0.104±0.04 N/A N/A 0.116±0.00 N/A N/A
ENSDARG00000015854 ENSDART00000024225 N/A N/A N/A N/A N/A N/A 0.245±0.28 0.091±0.00 0.022±0.00 N/A 0.326±0.00 N/A N/A
ENSDART00000150228 N/A N/A N/A 4.616±0.00 N/A N/A 0.230±0.00 1.088±0.60 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSG00000070748 ENST00000337653 N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000339797 0.010±0.00 N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A N/A N/A N/A 0.102±0.00
ENST00000351556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A
ENST00000395559 N/A N/A N/A N/A N/A 0.146±0.00 0.045±0.00 N/A N/A N/A N/A N/A N/A
ENST00000395562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187714 ENST00000374115 N/A N/A N/A N/A 0.048±0.00 0.594±0.00 0.037±0.00 N/A N/A 0.019±0.00 N/A 1.499±0.45 0.089±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUSG00000021919 ENSMUST00000070125 0.024±0.00 0.016±0.00 0.036±0.00 0.472±0.34 0.099±0.01 0.337±0.18 0.033±0.01 N/A 0.009±0.00 0.038±0.00 N/A N/A 0.031±0.02
ENSMUSG00000097794 ENSMUST00000180662 N/A N/A N/A 0.243±0.13 N/A 0.070±0.00 0.066±0.00 0.035±0.00 0.009±0.00 N/A N/A N/A 0.114±0.07
ENSMUSG00000100241 ENSMUST00000191501 0.010±0.00 0.024±0.01 0.103±0.02 1.119±0.91 N/A 1.132±0.24 0.167±0.02 N/A 0.007±0.00 0.023±0.00 N/A 0.021±0.02 1.114±0.55

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