C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12 (sodium/chloride transporter), member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070915 SLC12A3 9606 + 16:56865207-56915850 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262502 SLC12A3-003 56865211-56914525 protein_coding
  ENST00000438926 SLC12A3-001 56865207-56915850 protein_coding
  ENST00000563236 SLC12A3-005 56865211-56914522 protein_coding
  ENST00000563352 SLC12A3-007 56907026-56913978 processed_transcript
  ENST00000566786 SLC12A3-002 56865207-56913405 protein_coding
  ENST00000569002 SLC12A3-006 56902222-56904852 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000262502ENST00000438926ENST00000563236ENST00000563352ENST00000566786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000262502 0.011±0.00 0.192±0.00 11.520±0.00 0.011±0.00 0.028±0.00 0.014±0.00 0.011±0.00 14.478±0.00 0.006±0.00 0.010±0.00 0.006±0.00 0.784±1.04 0.029±0.00
ENST00000438926 N/A N/A 3.166±0.00 N/A N/A N/A N/A N/A N/A N/A 0.009±0.01 1.016±0.00 N/A
ENST00000563236 0.011±0.00 0.210±0.00 4.689±0.00 0.011±0.00 0.028±0.00 0.014±0.00 0.011±0.00 35.448±0.00 0.006±0.00 0.010±0.00 0.006±0.00 0.581±0.75 0.029±0.00
ENST00000563352 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.113±0.00
ENST00000566786 N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.014±0.01 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000450 CIL_000450_0002 CGP 16:56730105-56915850
CIL_000453 CIL_000453_0002 CGP 16:56865207-56944863

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 ISS transporter activity
GO:0005515 IPI protein binding
GO:0005829 IEA cytosol
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006814 ISS sodium ion transport
GO:0006821 TAS chloride transport
GO:0015377 IEA cation:chloride symporter activity
GO:0015378 TAS sodium:chloride symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0035725 ISS sodium ion transmembrane transport
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013855 slc12a3 solute carrier family 12 (sodium/chloride transporters), member 3 protein_coding Danio_rerio
ENSMUSG00000031766 Slc12a3 solute carrier family 12, member 3 protein_coding Mus_musculus

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