C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000453_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000013855-ENSDARG00000024314 CGP 7955 18:17242630-17267746
GeneTranscriptPositionBiotype
ENSDARG00000013855 (slc12a3)
solute carrier family 12 (sodium/chloride transporters), member 3 		ENSDART00000010998 (slc12a3-001) 17242647-17257923 protein_coding
ENSDART00000145340 (slc12a3-002) 17242651-17244919 retained_intron
ENSDART00000154815 (slc12a3-201) 17242630-17257174 protein_coding
ENSDARG00000024314 (herpud1)
homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 		ENSDART00000034287 (herpud1-201) 17259897-17267745 protein_coding
ENSDART00000129631 (herpud1-002) 17259929-17267739 nonsense_mediated_decay
ENSDART00000141465 (herpud1-003) 17260114-17264963 nonsense_mediated_decay
ENSDART00000151850 (herpud1-004) 17259807-17264956 protein_coding
ENSDART00000151934 (herpud1-001) 17259897-17267746 protein_coding
CIL_000453_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070915-ENSG00000051108 CGP 9606 16:56865207-56944863
GeneTranscriptPositionBiotype
ENSG00000051108 (HERPUD1)
homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 		ENST00000300302 (HERPUD1-002) 56932147-56943881 protein_coding
ENST00000344114 (HERPUD1-004) 56932147-56943881 protein_coding
ENST00000379792 (HERPUD1-003) 56932160-56943886 protein_coding
ENST00000439977 (HERPUD1-001) 56932048-56944863 protein_coding
ENST00000562914 (HERPUD1-009) 56932142-56935554 retained_intron
ENST00000563343 (HERPUD1-013) 56933208-56939946 protein_coding
ENST00000563781 (HERPUD1-017) 56935378-56942202 processed_transcript
ENST00000563911 (HERPUD1-016) 56936724-56943557 protein_coding
ENST00000564678 (HERPUD1-007) 56935951-56943877 retained_intron
ENST00000565966 (HERPUD1-020) 56932147-56940047 nonsense_mediated_decay
ENST00000566550 (HERPUD1-011) 56934965-56935563 retained_intron
ENST00000567944 (HERPUD1-018) 56939144-56940113 retained_intron
ENST00000568358 (HERPUD1-019) 56935402-56943548 protein_coding
ENST00000568651 (HERPUD1-014) 56939249-56943297 protein_coding
ENST00000568676 (HERPUD1-010) 56932147-56935648 retained_intron
ENST00000568814 (HERPUD1-015) 56942011-56943407 processed_transcript
ENST00000569429 (HERPUD1-012) 56933184-56939992 protein_coding
ENST00000569569 (HERPUD1-005) 56932147-56937413 retained_intron
ENST00000570273 (HERPUD1-006) 56932148-56943599 processed_transcript
ENSG00000070915 (SLC12A3)
solute carrier family 12 (sodium/chloride transporter), member 3 		ENST00000262502 (SLC12A3-003) 56865211-56914525 protein_coding
ENST00000438926 (SLC12A3-001) 56865207-56915850 protein_coding
ENST00000563236 (SLC12A3-005) 56865211-56914522 protein_coding
ENST00000563352 (SLC12A3-007) 56907026-56913978 processed_transcript
ENST00000566786 (SLC12A3-002) 56865207-56913405 protein_coding
ENST00000569002 (SLC12A3-006) 56902222-56904852 retained_intron
ENSG00000243988 (RPS24P17)
ribosomal protein S24 pseudogene 17 		ENST00000479895 (RPS24P17-001) 56906534-56906956 processed_pseudogene
ENSG00000261114 (RP11-325K4.2)
 ENST00000570210 (RP11-325K4.2-001) 56941028-56941726 sense_intronic
ENSG00000261270 (RP11-325K4.3)
 ENST00000565861 (RP11-325K4.3-001) 56940278-56941342 sense_intronic
CIL_000453_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031766-ENSMUSG00000031770 CGP 10090 8:94329192-94395377
GeneTranscriptPositionBiotype
ENSMUSG00000031766 (Slc12a3)
solute carrier family 12, member 3 		ENSMUST00000034218 (Slc12a3-201) 94329192-94366213 protein_coding
ENSMUSG00000031770 (Herpud1)
homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 		ENSMUST00000034220 (Herpud1-002) 94386495-94395358 protein_coding
ENSMUST00000159450 (Herpud1-004) 94387599-94392309 processed_transcript
ENSMUST00000160866 (Herpud1-005) 94393531-94394909 retained_intron
ENSMUST00000161085 (Herpud1-003) 94387553-94392469 processed_transcript
ENSMUST00000161576 (Herpud1-001) 94386438-94395377 protein_coding
ENSMUSG00000089712 (Gm15889)
predicted gene 15889 		ENSMUST00000159142 (Gm15889-001) 94377921-94379622 lincRNA
ENSMUSG00000090105 (Gm15890)
predicted gene 15890 		ENSMUST00000161024 (Gm15890-001) 94379237-94386972 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000453_0001ENSDARG00000013855ENSDART00000010998ENSDART00000145340ENSDART00000154815ENSDARG00000024314ENSDART00000034287ENSDART00000129631ENSDART00000141465ENSDART00000151850ENSDART00000151934CIL_000453_0002ENSG00000051108ENST00000300302ENST00000344114ENST00000379792ENST00000439977ENST00000562914ENST00000563343ENST00000563781ENST00000563911ENST00000564678ENST00000565966ENST00000566550ENST00000567944ENST00000568358ENST00000568651ENST00000568676ENST00000568814ENST00000569429ENST00000569569ENST00000570273ENSG00000070915ENST00000262502ENST00000438926ENST00000563236ENST00000563352ENST00000566786ENST00000569002ENSG00000243988ENST00000479895ENSG00000261114ENST00000570210ENSG00000261270ENST00000565861CIL_000453_0003ENSMUSG00000031766ENSMUST00000034218ENSMUSG00000031770ENSMUST00000034220ENSMUST00000159450ENSMUST00000160866ENSMUST00000161085ENSMUST00000161576ENSMUSG00000089712ENSMUST00000159142ENSMUSG00000090105ENSMUST00000161024
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000453_0001ENSDARG00000013855ENSDART00000010998ENSDART00000145340ENSDART00000154815ENSDARG00000024314ENSDART00000034287ENSDART00000129631ENSDART00000151850ENSDART00000151934CIL_000453_0002ENSG00000051108ENST00000300302ENST00000379792ENST00000439977ENST00000563781ENST00000563911ENST00000564678ENST00000568814ENST00000569569ENST00000570273ENSG00000070915ENST00000262502ENST00000438926ENST00000563236ENST00000563352ENST00000566786ENSG00000243988ENST00000479895ENSG00000261114ENST00000570210ENSG00000261270ENST00000565861CIL_000453_0003ENSMUSG00000031766ENSMUST00000034218ENSMUSG00000031770ENSMUST00000034220ENSMUST00000161085ENSMUST00000161576ENSMUSG00000089712ENSMUST00000159142ENSMUSG00000090105ENSMUST00000161024
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013855 ENSDART00000010998 N/A N/A N/A 0.142±0.03 N/A N/A N/A 69.577±10.62 N/A N/A 8.229±0.00 N/A N/A N/A
ENSDART00000145340 N/A N/A N/A 0.651±0.00 N/A N/A 0.627±0.00 N/A 0.091±0.00 N/A N/A N/A N/A N/A
ENSDART00000154815 N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A
ENSDARG00000024314 ENSDART00000034287 N/A N/A N/A 8.030±2.86 N/A N/A 6.687±1.13 19.454±0.00 N/A N/A 4.353±0.00 N/A N/A N/A
ENSDART00000129631 N/A N/A N/A 1.703±0.00 N/A N/A N/A 10.394±5.48 N/A N/A N/A N/A N/A N/A
ENSDART00000141465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151850 N/A N/A N/A 2.293±0.00 N/A N/A 4.388±0.00 N/A 1.008±0.00 N/A N/A N/A N/A N/A
ENSDART00000151934 N/A N/A N/A 4.815±2.29 N/A N/A 2.307±0.00 N/A 2.922±0.00 N/A 5.969±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000051108 ENST00000300302 14.351±0.00 N/A N/A 8.064±0.00 14.483±0.00 18.304±0.00 8.576±0.00 60.035±0.00 11.841±0.00 24.254±0.00 15.162±8.57 18.125±13.51 24.416±8.12 5.476±0.00
ENST00000344114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379792 9.385±0.00 22.628±0.00 2.097±0.00 9.947±6.18 24.206±0.00 13.224±8.66 17.287±0.00 37.966±30.69 13.729±0.00 54.969±0.00 22.285±0.00 12.650±2.30 21.382±3.35 18.470±0.00
ENST00000439977 N/A 9.111±0.00 1.988±0.00 2.167±0.00 N/A 4.430±0.00 1.123±0.00 N/A N/A N/A N/A 3.222±0.00 N/A N/A
ENST00000562914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563781 N/A N/A 6.891±0.00 N/A 12.607±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563911 N/A N/A N/A 3.673±0.00 N/A N/A N/A N/A N/A N/A N/A 13.184±0.00 21.760±0.00 12.747±0.00
ENST00000564678 N/A N/A N/A N/A 5.372±0.00 N/A 2.429±0.00 4.811±0.00 2.404±0.00 5.574±0.00 N/A 2.214±0.00 N/A N/A
ENST00000565966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 56.784±0.00 71.049±0.00 44.946±0.00
ENST00000569429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569569 N/A N/A N/A N/A 5.043±0.00 N/A N/A N/A N/A 4.290±0.00 N/A N/A N/A N/A
ENST00000570273 N/A N/A N/A N/A N/A N/A 9.843±0.00 5.289±0.00 N/A 38.509±0.00 21.857±0.00 26.605±0.00 28.418±4.30 8.102±0.00
ENSG00000070915 ENST00000262502 0.011±0.00 0.192±0.00 11.520±0.00 0.011±0.00 0.028±0.00 0.014±0.00 0.011±0.00 14.478±0.00 0.006±0.00 0.010±0.00 N/A 0.006±0.00 0.784±1.04 0.029±0.00
ENST00000438926 N/A N/A 3.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.01 1.016±0.00 N/A
ENST00000563236 0.011±0.00 0.210±0.00 4.689±0.00 0.011±0.00 0.028±0.00 0.014±0.00 0.011±0.00 35.448±0.00 0.006±0.00 0.010±0.00 N/A 0.006±0.00 0.581±0.75 0.029±0.00
ENST00000563352 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A 0.113±0.00
ENST00000566786 N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.014±0.01 N/A N/A N/A N/A
ENST00000569002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243988 ENST00000479895 0.027±0.00 0.650±0.00 8.703±0.00 N/A 0.111±0.00 0.026±0.00 0.051±0.00 5.968±0.00 0.025±0.00 0.026±0.00 0.124±0.00 0.046±0.01 0.157±0.12 0.075±0.00
ENSG00000261114 ENST00000570210 0.262±0.00 2.818±0.00 1.879±0.00 0.410±0.12 0.729±0.48 0.345±0.03 0.196±0.03 1.656±0.00 0.160±0.04 1.529±0.58 N/A 0.940±0.10 0.342±0.02 0.420±0.04
ENSG00000261270 ENST00000565861 0.531±0.00 2.686±0.00 2.144±0.00 0.305±0.12 0.728±0.12 0.672±0.27 0.305±0.18 1.463±0.00 0.261±0.16 2.280±0.81 0.622±0.00 0.530±0.02 0.111±0.00 0.307±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031766 ENSMUST00000034218 0.045±0.02 0.013±0.00 0.012±0.00 0.037±0.02 0.035±0.01 0.040±0.02 0.029±0.02 201.816±61.77 0.015±0.01 0.050±0.01 0.010±0.00 0.059±0.04 0.043±0.03 0.154±0.05
ENSMUSG00000031770 ENSMUST00000034220 13.688±3.58 48.743±6.17 31.822±3.36 2.740±0.19 26.602±7.55 97.715±16.95 25.831±6.53 81.613±24.35 72.480±53.64 78.592±46.97 8.129±1.11 50.188±41.59 6.943±2.47 15.250±0.00
ENSMUST00000159450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161085 N/A N/A N/A 5.760±0.00 N/A N/A N/A N/A N/A N/A N/A 15.254±2.33 10.550±5.17 33.096±0.00
ENSMUST00000161576 45.355±5.26 48.724±20.26 101.988±6.27 12.211±8.01 68.034±44.92 90.540±26.30 64.983±20.85 125.896±21.26 69.617±31.45 125.048±26.19 47.216±10.87 104.949±48.72 19.335±9.19 72.071±36.05
ENSMUSG00000089712 ENSMUST00000159142 0.211±0.07 N/A 0.221±0.00 N/A 0.230±0.05 0.919±0.45 N/A 4.295±1.53 0.512±0.18 1.621±0.34 0.228±0.00 0.393±0.14 0.361±0.12 N/A
ENSMUSG00000090105 ENSMUST00000161024 0.121±0.04 0.202±0.09 0.170±0.06 0.067±0.06 0.214±0.07 0.411±0.21 0.130±0.05 0.438±0.13 0.489±0.38 0.385±0.15 0.105±0.01 0.318±0.16 0.133±0.07 0.526±0.15

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