C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12 (sodium/chloride transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000563236 SLC12A3-005 ENSG00000070915 9606 + 16:56865211-56914522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000563236
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000563236 0.011±0.00 0.210±0.00 4.689±0.00 0.011±0.00 0.028±0.00 0.014±0.00 0.011±0.00 35.448±0.00 0.006±0.00 0.010±0.00 0.006±0.00 0.581±0.75 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000450 CIL_000450_0002 CGP 16:56730105-56915850
CIL_000453 CIL_000453_0002 CGP 16:56865207-56944863

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 ISS transporter activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS:IEA ion transport
GO:0006814 ISS sodium ion transport
GO:0006821 TAS chloride transport
GO:0015377 IEA cation:chloride symporter activity
GO:0015378 TAS sodium:chloride symporter activity
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 ISS apical plasma membrane
GO:0035725 ISS sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034218 Slc12a3-201 protein_coding Mus_musculus 0 2651
ENSDART00000042955 slc12a10.3-201 protein_coding Danio_rerio 0 220
ENSDART00000134653 slc12a10.3-001 protein_coding Danio_rerio 0 220

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