C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L31
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071082 RPL31 9606 + 2:101001715-101024032 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264258 RPL31-001 101001715-101007267 protein_coding
  ENST00000409000 RPL31-006 101002229-101004604 protein_coding
  ENST00000409028 RPL31-007 101002283-101019728 protein_coding
  ENST00000409038 RPL31-008 101002293-101018306 protein_coding
  ENST00000409320 RPL31-002 101002293-101006418 protein_coding
  ENST00000409650 RPL31-009 101002293-101018289 protein_coding
  ENST00000409711 RPL31-004 101002691-101006367 protein_coding
  ENST00000409733 RPL31-010 101002293-101006419 protein_coding
  ENST00000419276 RPL31-003 101002311-101006423 nonsense_mediated_decay
  ENST00000441435 RPL31-011 101002739-101024032 protein_coding
  ENST00000456292 RPL31-005 101002691-101006071 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264258ENST00000409320ENST00000409733ENST00000456292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264258 N/A N/A 25.971±0.00 55.351±0.00 28.499±0.00 25.817±0.00 14.321±0.00 22.644±0.00 34.955±0.00 21.955±0.00 N/A 74.943±0.00 N/A 25.890±0.00
ENST00000409320 N/A N/A 23.285±0.00 84.232±0.00 88.761±0.00 133.477±0.00 56.868±0.00 74.018±0.00 151.957±0.00 86.385±0.00 61.411±0.00 353.951±0.00 34.316±0.00 N/A
ENST00000409733 205.485±0.00 383.400±0.00 N/A 179.889±0.00 133.670±99.76 277.738±199.06 54.899±41.08 108.254±74.84 113.366±7.61 167.682±144.04 113.578±60.43 479.076±170.21 225.640±113.35 305.084±0.00
ENST00000456292 470.394±0.00 711.435±0.00 48.158±0.00 291.913±44.85 332.684±103.46 395.327±243.57 156.677±93.72 235.677±101.36 231.929±94.71 582.038±410.72 273.927±191.84 1427.707±829.78 835.922±404.22 279.627±115.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004HI CIL_0004HI_0001 CGP 2:100820152-101024032
CIL_0004HF CIL_0004HF_0001 CGP 2:101001715-101252866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053365 rpl31 ribosomal protein L31 protein_coding Danio_rerio
ENSMUSG00000073702 Rpl31 ribosomal protein L31 protein_coding Mus_musculus

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