C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004HI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170485-ENSG00000071082 CGP 9606 2:100820152-101024032
GeneTranscriptPositionBiotype
ENSG00000071082 (RPL31)
ribosomal protein L31 		ENST00000264258 (RPL31-001) 101001715-101007267 protein_coding
ENST00000409000 (RPL31-006) 101002229-101004604 protein_coding
ENST00000409028 (RPL31-007) 101002283-101019728 protein_coding
ENST00000409038 (RPL31-008) 101002293-101018306 protein_coding
ENST00000409320 (RPL31-002) 101002293-101006418 protein_coding
ENST00000409650 (RPL31-009) 101002293-101018289 protein_coding
ENST00000409711 (RPL31-004) 101002691-101006367 protein_coding
ENST00000409733 (RPL31-010) 101002293-101006419 protein_coding
ENST00000419276 (RPL31-003) 101002311-101006423 nonsense_mediated_decay
ENST00000441435 (RPL31-011) 101002739-101024032 protein_coding
ENST00000456292 (RPL31-005) 101002691-101006071 protein_coding
ENSG00000170485 (NPAS2)
neuronal PAS domain protein 2 		ENST00000335681 (NPAS2-001) 100820152-100996829 protein_coding
ENST00000427413 (NPAS2-004) 100821025-100948299 protein_coding
ENST00000433408 (NPAS2-012) 100982254-100996055 protein_coding
ENST00000448812 (NPAS2-007) 100925146-100971049 protein_coding
ENST00000450763 (NPAS2-010) 100974866-100993527 protein_coding
ENST00000451740 (NPAS2-005) 100925162-100937842 protein_coding
ENST00000471974 (NPAS2-009) 100974803-100982636 processed_transcript
ENST00000474550 (NPAS2-002) 100970601-100996055 retained_intron
ENST00000486017 (NPAS2-008) 100925146-100964176 processed_transcript
ENST00000490052 (NPAS2-011) 100994443-100996055 processed_transcript
ENST00000492373 (NPAS2-006) 100934111-100964918 processed_transcript
ENST00000495559 (NPAS2-003) 100988310-100996822 retained_intron
ENSG00000204634 (TBC1D8)
TBC1 domain family, member 8 (with GRAM domain) 		ENST00000376840 (TBC1D8-011) 101007617-101151253 protein_coding
ENST00000409318 (TBC1D8-001) 101007617-101151384 protein_coding
ENST00000462819 (TBC1D8-006) 101187824-101252855 processed_transcript
ENST00000463469 (TBC1D8-004) 101090253-101252866 processed_transcript
ENST00000473937 (TBC1D8-007) 101028303-101032944 retained_intron
ENST00000481317 (TBC1D8-008) 101028467-101032481 processed_transcript
ENST00000485851 (TBC1D8-005) 101187984-101252864 processed_transcript
ENST00000485875 (TBC1D8-009) 101028345-101029972 retained_intron
ENST00000487392 (TBC1D8-003) 101059452-101109963 processed_transcript
ENST00000494011 (TBC1D8-010) 101011040-101022373 retained_intron
ENSG00000232034 (AC092168.2)
 ENST00000430586 (AC092168.2-001) 100822661-100847220 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0004HI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026077-ENSMUSG00000073702 CGP 10090 1:39193731-39371908
GeneTranscriptPositionBiotype
ENSMUSG00000003134 (Tbc1d8)
TBC1 domain family, member 8 		ENSMUST00000054462 (Tbc1d8-201) 39371499-39478747 protein_coding
ENSMUSG00000026077 (Npas2)
neuronal PAS domain protein 2 		ENSMUST00000056815 (Npas2-001) 39194212-39363234 protein_coding
ENSMUST00000172825 (Npas2-003) 39341555-39345466 processed_transcript
ENSMUST00000173050 (Npas2-002) 39193731-39287615 protein_coding
ENSMUSG00000073702 (Rpl31)
ribosomal protein L31 		ENSMUST00000086535 (Rpl31-201) 39367851-39371908 protein_coding
ENSMUST00000178079 (Rpl31-202) 39367851-39371908 protein_coding
ENSMUST00000179954 (Rpl31-203) 39367851-39371908 protein_coding
ENSMUSG00000092553 (Gm20428)
predicted gene 20428 		ENSMUST00000174365 (Gm20428-001) 39276283-39276565 processed_pseudogene
ENSMUSG00000092563 (Gm3617)
predicted gene 3617 		ENSMUST00000173076 (Gm3617-001) 39314899-39315453 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004HI_0001ENSG00000071082ENST00000264258ENST00000409320ENST00000409733ENST00000456292ENSG00000170485ENST00000335681ENSG00000204634ENST00000376840ENST00000409318ENSG00000232034ENST00000430586CIL_0004HI_0002ENSMUSG00000003134ENSMUST00000054462ENSMUSG00000026077ENSMUST00000056815ENSMUST00000173050ENSMUSG00000073702ENSMUST00000086535ENSMUST00000178079ENSMUST00000179954ENSMUSG00000092553ENSMUST00000174365ENSMUSG00000092563ENSMUST00000173076
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071082 ENST00000264258 N/A N/A 25.971±0.00 55.351±0.00 28.499±0.00 25.817±0.00 14.321±0.00 22.644±0.00 34.955±0.00 21.955±0.00 N/A 74.943±0.00 N/A 25.890±0.00
ENST00000409000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409320 N/A N/A 23.285±0.00 84.232±0.00 88.761±0.00 133.477±0.00 56.868±0.00 74.018±0.00 151.957±0.00 86.385±0.00 61.411±0.00 353.951±0.00 34.316±0.00 N/A
ENST00000409650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409733 205.485±0.00 383.400±0.00 N/A 179.889±0.00 133.670±99.76 277.738±199.06 54.899±41.08 108.254±74.84 113.366±7.61 167.682±144.04 113.578±60.43 479.076±170.21 225.640±113.35 305.084±0.00
ENST00000419276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456292 470.394±0.00 711.435±0.00 48.158±0.00 291.913±44.85 332.684±103.46 395.327±243.57 156.677±93.72 235.677±101.36 231.929±94.71 582.038±410.72 273.927±191.84 1427.707±829.78 835.922±404.22 279.627±115.50
ENSG00000170485 ENST00000335681 N/A N/A N/A N/A N/A N/A 7.886±0.00 9.618±0.00 6.721±0.00 N/A N/A N/A N/A N/A
ENST00000427413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204634 ENST00000376840 4.490±0.00 5.079±0.00 2.052±0.00 1.897±0.00 3.534±1.01 2.792±0.50 5.004±2.96 5.666±3.25 4.110±2.16 8.375±2.96 4.556±1.70 7.741±3.85 1.712±0.00 9.970±0.12
ENST00000409318 1.992±0.00 N/A N/A 1.447±0.00 N/A N/A 2.343±1.16 N/A N/A N/A 3.867±1.65 N/A N/A N/A
ENST00000462819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232034 ENST00000430586 0.108±0.00 0.331±0.00 N/A 0.135±0.00 0.109±0.00 0.286±0.05 N/A N/A 0.501±0.34 0.063±0.00 N/A 0.751±0.91 0.050±0.00 0.327±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003134 ENSMUST00000054462 7.286±2.51 2.596±1.12 21.887±1.86 4.196±1.91 7.686±2.03 6.726±0.84 3.134±0.29 2.963±0.43 6.542±4.32 14.278±1.31 4.354±0.60 10.835±3.42 5.898±2.53 3.848±1.34
ENSMUSG00000026077 ENSMUST00000056815 0.494±0.00 3.565±1.24 0.391±0.00 0.548±0.39 2.530±0.18 14.082±1.78 N/A N/A 0.446±0.46 1.293±0.00 0.051±0.01 3.158±1.27 N/A 0.376±0.11
ENSMUST00000172825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173050 N/A 2.643±0.00 N/A 25.950±0.00 N/A N/A N/A N/A N/A N/A N/A 4.113±0.00 8.269±6.55 N/A
ENSMUSG00000073702 ENSMUST00000086535 47.623±11.31 N/A 529.499±27.34 142.116±95.99 44.491±13.32 57.226±24.60 34.580±7.47 60.122±13.48 239.622±236.28 41.529±9.07 102.981±7.29 80.971±92.62 234.526±213.63 35.402±16.52
ENSMUST00000178079 N/A N/A N/A 5.747±0.00 N/A N/A N/A N/A 10.505±1.34 N/A N/A N/A N/A 9.752±4.44
ENSMUST00000179954 11.653±0.00 11.096±2.16 N/A N/A 9.803±0.12 10.668±0.90 N/A 6.387±0.00 N/A N/A N/A 14.205±1.12 N/A N/A
ENSMUSG00000092553 ENSMUST00000174365 0.298±0.00 N/A N/A N/A N/A 0.543±0.01 N/A N/A N/A 0.496±0.17 N/A 1.307±0.00 N/A N/A
ENSMUSG00000092563 ENSMUST00000173076 0.146±0.00 N/A 0.182±0.10 0.299±0.00 N/A 0.266±0.00 N/A N/A 0.060±0.06 0.133±0.00 N/A 0.079±0.00 0.070±0.03 N/A

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