C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264258 RPL31-001 ENSG00000071082 9606 + 2:101001715-101007267 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000264258
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000264258 25.971±0.00 55.351±0.00 28.499±0.00 25.817±0.00 14.321±0.00 22.644±0.00 34.955±0.00 21.955±0.00 74.943±0.00 25.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004HI CIL_0004HI_0001 CGP 2:100820152-101024032
CIL_0004HF CIL_0004HF_0001 CGP 2:101001715-101252866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086535 Rpl31-201 protein_coding Mus_musculus 0 601
ENSMUST00000086596 Rpl31-ps9-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000179954 Rpl31-203 protein_coding Mus_musculus 0 521
ENSMUST00000178079 Rpl31-202 protein_coding Mus_musculus 0 521
ENSMUST00000181935 Rpl31-ps8-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119898 Rpl31-ps11-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000119957 Rpl31-ps12-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000181130 Rpl31-ps16-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000143596 Rpl31-ps14-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000116034 Rpl31-ps10-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000060994 Rpl31-ps13-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000097040 Rpl31-ps17-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000080982 Rpl31-ps20-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000085128 Rpl31-ps1-201 processed_pseudogene Mus_musculus 0 460
ENSMUST00000079114 Rpl31-ps4-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000180885 Rpl31-ps18-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000181857 Rpl31-ps15-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000180629 Rpl31-ps7-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000180929 Rp31-ps19-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000118086 Rpl31-ps5-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000181182 Rpl31-ps21-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000119959 Rpl31-ps6-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000181557 Rpl31-ps25-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000117961 Rpl31-ps22-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000191562 RP24-82I5.2-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000191416 RP23-416O18.2-001 processed_pseudogene Mus_musculus 0 298

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