C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 19, type 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071991 CDH19 9606 - 18:66501083-66604138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262150 CDH19-001 66501083-66604134 protein_coding
  ENST00000454642 CDH19-003 66532339-66572171 protein_coding
  ENST00000540086 CDH19-005 66505045-66604088 protein_coding
  ENST00000579658 CDH19-002 66504812-66604138 nonsense_mediated_decay
  ENST00000580157 CDH19-006 66572010-66604088 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262150ENST00000454642ENST00000540086ENST00000579658
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262150 0.578±0.00 0.261±0.00 0.019±0.00 N/A N/A 1.773±1.14 2.372±0.83 0.324±0.00 0.496±0.00 0.674±0.00 N/A 0.005±0.00 0.113±0.04 0.776±0.00
ENST00000454642 N/A N/A 0.091±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540086 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.430±0.00 0.145±0.00 N/A N/A N/A
ENST00000579658 1.096±0.00 0.265±0.00 N/A 2.887±0.00 0.901±0.00 3.040±0.84 3.271±0.14 N/A 2.132±0.00 0.391±0.10 0.056±0.00 0.086±0.08 0.384±0.06 0.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QJ CIL_0005QJ_0001 CGP 18:65750252-66604138
CIL_0005ST CIL_0005ST_0001 CGP 18:66501083-67516980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074991 CDH19 cadherin 19, type 2 protein_coding Danio_rerio
ENSMUSG00000047216 Cdh19 cadherin 19, type 2 protein_coding Mus_musculus

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