C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA nucleotidyl transferase, CCA-adding, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072756 TRNT1 9606 + 3:3126916-3150879 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251607 TRNT1-001 3126916-3149023 protein_coding
  ENST00000280591 TRNT1-004 3126952-3149023 protein_coding
  ENST00000339437 TRNT1-003 3126951-3130679 protein_coding
  ENST00000397779 TRNT1-011 3129040-3137362 nonsense_mediated_decay
  ENST00000402675 TRNT1-002 3127020-3130679 protein_coding
  ENST00000413000 TRNT1-008 3127020-3137297 protein_coding
  ENST00000420393 TRNT1-007 3126980-3130214 protein_coding
  ENST00000434583 TRNT1-010 3126965-3150879 nonsense_mediated_decay
  ENST00000465998 TRNT1-006 3126954-3129496 retained_intron
  ENST00000469632 TRNT1-009 3127061-3131752 processed_transcript
  ENST00000482311 TRNT1-012 3129155-3140728 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251607ENST00000280591ENST00000434583ENST00000482311
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251607 2.825±0.00 N/A 3.284±0.47 2.817±0.00 4.097±1.06 2.361±0.76 4.232±2.56 2.333±0.33 2.398±0.41 1.835±0.00 3.300±0.66 3.032±0.33 4.967±0.00
ENST00000280591 N/A N/A N/A N/A N/A N/A N/A N/A 2.180±0.00 N/A N/A N/A N/A
ENST00000434583 N/A 2.066±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.633±0.62 N/A N/A
ENST00000482311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.974±0.00 11.963±0.00 40.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050N CIL_00050N_0001 CGP 3:3066326-3150879
CIL_00050M CIL_00050M_0001 CGP 3:3126916-3179710

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001680 IEA tRNA 3'-terminal CCA addition
GO:0003723 IEA RNA binding
GO:0004810 IDA tRNA adenylyltransferase activity
GO:0005524 TAS ATP binding
GO:0005622 IDA intracellular
GO:0005739 IDA mitochondrion
GO:0006396 IEA RNA processing
GO:0006626 TAS protein targeting to mitochondrion
GO:0016779 IEA nucleotidyltransferase activity
GO:0042780 IDA tRNA 3'-end processing
GO:0052927 IEA CTP:tRNA cytidylyltransferase activity
GO:0052928 IEA CTP:3'-cytidine-tRNA cytidylyltransferase activity
GO:0052929 IEA ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075297 trnt1 tRNA nucleotidyl transferase, CCA-adding, 1 protein_coding Danio_rerio
ENSMUSG00000013736 Trnt1 tRNA nucleotidyl transferase, CCA-adding, 1 protein_coding Mus_musculus

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