C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA nucleotidyl transferase, CCA-adding, 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000013736 Trnt1 10090 + 6:106769120-106782474 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057578 Trnt1-001 106769166-106782474 protein_coding
  ENSMUST00000113247 Trnt1-002 106769120-106777681 protein_coding
  ENSMUST00000113248 Trnt1-004 106769166-106781654 protein_coding
  ENSMUST00000113249 Trnt1-003 106769141-106781871 protein_coding
  ENSMUST00000147084 Trnt1-005 106769170-106770164 processed_transcript
  ENSMUST00000154026 Trnt1-006 106769213-106773055 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057578ENSMUST00000113248ENSMUST00000113249ENSMUST00000154026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057578 4.204±1.25 7.566±2.55 7.503±0.06 8.839±1.20 5.105±0.84 3.696±1.34 3.725±0.32 5.190±0.51 6.682±3.50 6.049±0.12 3.775±1.05 6.806±4.00 9.585±5.55 11.082±1.64
ENSMUST00000113248 N/A 6.160±0.00 N/A 10.928±0.00 N/A N/A N/A N/A 3.928±0.00 N/A 3.977±0.00 3.491±0.53 N/A 14.315±0.00
ENSMUST00000113249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.676±0.09 N/A
ENSMUST00000154026 N/A 12.812±3.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050N CIL_00050N_0002 CGP 6:106711975-106782474
CIL_00050M CIL_00050M_0002 CGP 6:106769120-106800074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0001680 IEA tRNA 3'-terminal CCA addition
GO:0004810 ISS tRNA adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005739 ISS mitochondrion
GO:0008033 ISO tRNA processing
GO:0009022 ISO tRNA nucleotidyltransferase activity
GO:0042780 ISS tRNA 3'-end processing
GO:0052927 IEA CTP:tRNA cytidylyltransferase activity
GO:0052928 IEA CTP:3'-cytidine-tRNA cytidylyltransferase activity
GO:0052929 IEA ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075297 trnt1 tRNA nucleotidyl transferase, CCA-adding, 1 protein_coding Danio_rerio
ENSG00000072756 TRNT1 tRNA nucleotidyl transferase, CCA-adding, 1 protein_coding Homo_sapiens

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