C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA nucleotidyl transferase, CCA-adding, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434583 TRNT1-010 ENSG00000072756 9606 + 3:3126965-3150879 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryENST00000434583
Transcript ID Bladder Ovary
ENST00000434583 2.066±0.00 3.633±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050N CIL_00050N_0001 CGP 3:3066326-3150879
CIL_00050M CIL_00050M_0001 CGP 3:3126916-3179710

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001680 IEA tRNA 3'-terminal CCA addition
GO:0003723 IEA RNA binding
GO:0004810 IDA tRNA adenylyltransferase activity
GO:0005524 TAS ATP binding
GO:0005622 IDA intracellular
GO:0005739 IDA mitochondrion
GO:0006396 IEA RNA processing
GO:0006626 TAS protein targeting to mitochondrion
GO:0016779 IEA nucleotidyltransferase activity
GO:0042780 IDA tRNA 3'-end processing
GO:0052927 IEA CTP:tRNA cytidylyltransferase activity
GO:0052928 IEA CTP:3'-cytidine-tRNA cytidylyltransferase activity
GO:0052929 IEA ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113248 Trnt1-004 protein_coding Mus_musculus 0 1561
ENSMUST00000057578 Trnt1-001 protein_coding Mus_musculus 0 1557
ENSMUST00000113249 Trnt1-003 protein_coding Mus_musculus 0 1544
ENSMUST00000113247 Trnt1-002 protein_coding Mus_musculus 0 717
ENSMUST00000049675 Crbn-003 protein_coding Mus_musculus 0 339

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