C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 5A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000073614 KDM5A 9606 - 12:280129-389454 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382815 KDM5A-201 284336-389246 protein_coding
  ENST00000399788 KDM5A-001 280129-389454 protein_coding
  ENST00000535014 KDM5A-011 365970-389264 protein_coding
  ENST00000535269 KDM5A-005 309894-311214 retained_intron
  ENST00000536014 KDM5A-010 366046-388530 protein_coding
  ENST00000540156 KDM5A-004 306894-307773 retained_intron
  ENST00000540168 KDM5A-007 323595-329170 retained_intron
  ENST00000540838 KDM5A-003 285456-292925 processed_transcript
  ENST00000541335 KDM5A-006 322263-323154 retained_intron
  ENST00000543507 KDM5A-009 384031-389273 protein_coding
  ENST00000544760 KDM5A-012 309891-389282 protein_coding
  ENST00000544777 KDM5A-008 333068-334328 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382815ENST00000399788ENST00000544760
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382815 3.684±0.00 6.524±0.00 2.017±0.00 2.105±0.44 3.532±0.58 1.861±0.00 1.294±0.31 2.137±0.11 2.535±1.16 2.764±0.05 1.677±0.69 5.161±3.57 3.964±2.90 8.539±1.10
ENST00000399788 1.447±0.00 N/A 1.163±0.00 0.505±0.03 0.888±0.00 1.385±0.15 0.774±0.47 0.684±0.05 2.120±1.83 1.029±0.15 0.586±0.00 1.902±0.00 1.679±0.75 3.928±0.86
ENST00000544760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.664±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 ISS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032922 ISS circadian regulation of gene expression
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process
GO:1901726 ISS negative regulation of histone deacetylase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079492 KDM5A lysine (K)-specific demethylase 5A protein_coding Danio_rerio
ENSMUSG00000030180 Kdm5a lysine (K)-specific demethylase 5A protein_coding Mus_musculus

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