C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysine (K)-specific demethylase 5A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030180 Kdm5a 10090 + 6:120364099-120444574 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000005108 Kdm5a-001 120364124-120444574 protein_coding
  ENSMUST00000100996 Kdm5a-201 120364099-120444574 protein_coding
  ENSMUST00000124525 Kdm5a-006 120427239-120430282 retained_intron
  ENSMUST00000124847 Kdm5a-005 120405803-120413832 retained_intron
  ENSMUST00000132009 Kdm5a-004 120364458-120419446 processed_transcript
  ENSMUST00000132599 Kdm5a-007 120429823-120432043 retained_intron
  ENSMUST00000135802 Kdm5a-003 120364124-120419473 processed_transcript
  ENSMUST00000142791 Kdm5a-008 120430204-120439711 processed_transcript
  ENSMUST00000152293 Kdm5a-002 120364132-120369608 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005108ENSMUST00000100996ENSMUST00000132009ENSMUST00000132599ENSMUST00000135802ENSMUST00000142791
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005108 N/A 1.641±0.28 N/A N/A 2.063±0.63 2.318±0.00 N/A N/A 0.917±0.26 1.766±0.00 N/A 2.037±0.91 N/A N/A
ENSMUST00000100996 3.359±0.73 N/A 4.567±0.47 3.789±2.06 2.418±0.88 1.689±0.57 1.839±0.60 2.169±0.38 2.208±0.79 3.672±0.51 1.409±0.39 4.778±2.46 5.666±2.02 2.563±0.30
ENSMUST00000132009 N/A 0.880±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 54.883±0.00 N/A
ENSMUST00000135802 N/A 1.053±0.00 N/A N/A 2.898±1.84 1.229±0.20 N/A 1.218±0.00 N/A 2.611±0.00 N/A 2.672±0.26 N/A N/A
ENSMUST00000142791 N/A N/A N/A 11.391±0.00 N/A N/A N/A N/A N/A N/A N/A 42.766±0.00 37.512±1.56 44.910±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_00083Y CIL_00083Y_0002 VISTA 6:120053928-120655330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019907 IEA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032922 IMP circadian regulation of gene expression
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process
GO:1901726 IDA negative regulation of histone deacetylase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079492 KDM5A lysine (K)-specific demethylase 5A protein_coding Danio_rerio
ENSG00000073614 KDM5A lysine (K)-specific demethylase 5A protein_coding Homo_sapiens

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