C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399788 KDM5A-001 ENSG00000073614 9606 - 12:280129-389454 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399788
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399788 1.447±0.00 1.163±0.00 0.505±0.03 0.888±0.00 1.385±0.15 0.774±0.47 0.684±0.05 2.120±1.83 1.029±0.15 0.586±0.00 1.902±0.00 1.679±0.75 3.928±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019907 IDA cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0032922 ISS circadian regulation of gene expression
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0055114 IEA oxidation-reduction process
GO:1901726 ISS negative regulation of histone deacetylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100996 Kdm5a-201 protein_coding Mus_musculus 0 7356
ENSMUST00000005108 Kdm5a-001 protein_coding Mus_musculus 0 7347
ENSMUST00000135802 Kdm5a-003 processed_transcript Mus_musculus 0 3450
ENSMUST00000132009 Kdm5a-004 processed_transcript Mus_musculus 0 3314
ENSMUST00000124847 Kdm5a-005 retained_intron Mus_musculus 0 881
ENSMUST00000142791 Kdm5a-008 processed_transcript Mus_musculus 0 640
ENSMUST00000132599 Kdm5a-007 retained_intron Mus_musculus 0 575
ENSMUST00000152293 Kdm5a-002 retained_intron Mus_musculus 0 531
ENSMUST00000124525 Kdm5a-006 retained_intron Mus_musculus 0 392

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