C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382815 KDM5A-201 ENSG00000073614 9606 - 12:284336-389246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382815
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382815 3.684±0.00 6.524±0.00 2.017±0.00 2.105±0.44 3.532±0.58 1.861±0.00 1.294±0.31 2.137±0.11 2.535±1.16 2.764±0.05 1.677±0.69 5.161±3.57 3.964±2.90 8.539±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100996 Kdm5a-201 protein_coding Mus_musculus 0 6647
ENSMUST00000005108 Kdm5a-001 protein_coding Mus_musculus 0 6645
ENSMUST00000135802 Kdm5a-003 processed_transcript Mus_musculus 0 3435
ENSMUST00000132009 Kdm5a-004 processed_transcript Mus_musculus 0 3314
ENSMUST00000142791 Kdm5a-008 processed_transcript Mus_musculus 0 1402
ENSMUST00000124847 Kdm5a-005 retained_intron Mus_musculus 0 881
ENSMUST00000132599 Kdm5a-007 retained_intron Mus_musculus 0 582
ENSMUST00000152293 Kdm5a-002 retained_intron Mus_musculus 0 516
ENSMUST00000124525 Kdm5a-006 retained_intron Mus_musculus 0 392

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