C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074621 SLC24A1 9606 + 15:65611366-65660995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261892 SLC24A1-001 65621932-65656260 protein_coding
  ENST00000339868 SLC24A1-201 65621932-65656260 protein_coding
  ENST00000399033 SLC24A1-004 65623999-65654110 protein_coding
  ENST00000425561 SLC24A1-008 65611378-65625857 processed_transcript
  ENST00000434116 SLC24A1-003 65611366-65652929 retained_intron
  ENST00000449142 SLC24A1-006 65642905-65654191 processed_transcript
  ENST00000505666 SLC24A1-011 65652739-65655513 protein_coding
  ENST00000535950 SLC24A1-009 65611812-65624018 processed_transcript
  ENST00000537259 SLC24A1-002 65611405-65660995 protein_coding
  ENST00000539516 SLC24A1-010 65643928-65650608 retained_intron
  ENST00000544319 SLC24A1-007 65622009-65654080 protein_coding
  ENST00000546330 SLC24A1-005 65624081-65654079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastOvaryPlacentaTestisENST00000261892ENST00000339868ENST00000434116
Transcript ID Bladder Breast Ovary Placenta Testis
ENST00000261892 N/A N/A 1.406±0.03 1.454±0.00 2.331±0.00
ENST00000339868 0.755±0.00 1.051±0.00 N/A 0.833±0.00 N/A
ENST00000434116 N/A N/A N/A N/A 0.984±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006HP CIL_0006HP_0002 CGP 15:65578753-65660995
CIL_0004VF CIL_0004VF_0002 CGP 15:65611366-65792293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 TAS ion transport
GO:0006816 NAS:IEA calcium ion transport
GO:0007601 NAS:IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008273 NAS:IEA calcium, potassium:sodium antiporter activity
GO:0009642 NAS response to light intensity
GO:0015293 IEA symporter activity
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0019867 NAS outer membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041431 slc24a1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 protein_coding Danio_rerio
ENSMUSG00000034452 Slc24a1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 protein_coding Mus_musculus

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