C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25, member 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075303 SLC25A40 9606 - 7:87833568-87876357 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341119 SLC25A40-001 87833568-87876349 protein_coding
  ENST00000429674 SLC25A40-004 87836168-87860598 nonsense_mediated_decay
  ENST00000444363 SLC25A40-003 87854257-87876357 nonsense_mediated_decay
  ENST00000446236 SLC25A40-008 87836110-87843864 nonsense_mediated_decay
  ENST00000470328 SLC25A40-006 87836249-87842267 retained_intron
  ENST00000483810 SLC25A40-007 87836297-87837147 retained_intron
  ENST00000491499 SLC25A40-005 87856291-87876305 retained_intron
  ENST00000496348 SLC25A40-009 87836111-87841741 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341119ENST00000429674ENST00000491499ENST00000496348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341119 1.246±0.00 1.926±0.00 N/A 3.100±2.29 1.626±0.00 1.086±0.06 1.246±0.33 2.515±1.65 0.732±0.20 1.371±0.00 0.514±0.00 2.296±0.86 0.770±0.17 2.419±0.00
ENST00000429674 N/A N/A 2.907±0.00 2.784±0.00 N/A 2.923±0.00 N/A N/A N/A 2.520±0.00 0.713±0.00 N/A N/A N/A
ENST00000491499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.711±0.00 N/A N/A N/A
ENST00000496348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.234±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052G CIL_00052G_0002 CGP 7:87627548-87876357
CIL_0004SW CIL_0004SW_0002 CGP 7:87833568-87909541

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015856 slc25a40 solute carrier family 25, member 40 protein_coding Danio_rerio
ENSMUSG00000054099 Slc25a40 solute carrier family 25, member 40 protein_coding Mus_musculus

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