C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: exosome component 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075914 EXOSC7 9606 + 3:44975241-45036066 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265564 EXOSC7-001 44976230-45011470 protein_coding
  ENST00000459856 EXOSC7-010 45011233-45012668 processed_transcript
  ENST00000461361 EXOSC7-002 44975241-45012666 processed_transcript
  ENST00000467846 EXOSC7-003 44976251-45002239 retained_intron
  ENST00000468667 EXOSC7-008 44976251-45012253 processed_transcript
  ENST00000477865 EXOSC7-007 44975357-44989242 processed_transcript
  ENST00000481405 EXOSC7-009 44976276-45036066 processed_transcript
  ENST00000482004 EXOSC7-012 44975468-45005375 processed_transcript
  ENST00000486727 EXOSC7-004 45004160-45011470 retained_intron
  ENST00000491476 EXOSC7-005 44976264-45012633 processed_transcript
  ENST00000498168 EXOSC7-006 44977092-44989242 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265564ENST00000467846ENST00000482004ENST00000486727ENST00000491476
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265564 12.038±0.00 14.214±0.00 5.162±2.29 N/A 4.561±1.91 6.620±4.94 16.860±0.00 6.699±0.00 9.407±4.23 7.606±4.81 15.411±3.89 14.439±0.00 23.499±2.35
ENST00000467846 N/A N/A N/A N/A 1.046±0.00 N/A N/A N/A N/A N/A 1.331±0.00 N/A N/A
ENST00000482004 N/A N/A N/A 3.609±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486727 N/A N/A 1.513±0.00 N/A 1.132±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491476 N/A 5.477±0.00 1.429±0.00 N/A 4.105±0.00 0.711±0.00 N/A 2.576±0.00 N/A 2.165±0.33 5.108±1.53 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000130 CIL_000130_0001 CGP 3:44874608-44976185
CIL_00073X CIL_00073X_0001 CGP 3:44915257-45036066
CIL_00041W CIL_00041W_0002 CGP 3:44975241-45036071

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 TAS 3'-5'-exoribonuclease activity
GO:0000178 TAS exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006364 TAS rRNA processing
GO:0006401 NAS RNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043336 exosc7 exosome component 7 protein_coding Danio_rerio
ENSMUSG00000025785 Exosc7 exosome component 7 protein_coding Mus_musculus

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