C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265564 EXOSC7-001 ENSG00000075914 9606 + 3:44976230-45011470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265564
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265564 12.038±0.00 14.214±0.00 5.162±2.29 4.561±1.91 6.620±4.94 16.860±0.00 6.699±0.00 9.407±4.23 7.606±4.81 15.411±3.89 14.439±0.00 23.499±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000130 CIL_000130_0001 CGP 3:44874608-44976185
CIL_00073X CIL_00073X_0001 CGP 3:44915257-45036066
CIL_00041W CIL_00041W_0002 CGP 3:44975241-45036071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 TAS 3'-5'-exoribonuclease activity
GO:0000178 TAS exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006364 TAS rRNA processing
GO:0006401 NAS RNA catabolic process
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0090503 TAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026891 Exosc7-001 protein_coding Mus_musculus 0 1158
ENSMUST00000159376 Exosc7-002 retained_intron Mus_musculus 0 372

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