C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor protein D52
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000076554 TPD52 9606 - 8:80034868-80231232 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379096 TPD52-002 80034868-80171558 protein_coding
  ENST00000379097 TPD52-006 80036591-80080816 protein_coding
  ENST00000448733 TPD52-201 80034872-80080831 protein_coding
  ENST00000517427 TPD52-008 80036585-80080816 protein_coding
  ENST00000517445 TPD52-022 80042620-80053353 retained_intron
  ENST00000517462 TPD52-004 80036591-80080816 nonsense_mediated_decay
  ENST00000518500 TPD52-031 80053046-80064552 retained_intron
  ENST00000518517 TPD52-029 80038185-80171471 nonsense_mediated_decay
  ENST00000518937 TPD52-001 80036100-80171659 protein_coding
  ENST00000519250 TPD52-032 80051544-80231232 processed_transcript
  ENST00000519303 TPD52-003 80037307-80171200 protein_coding
  ENST00000520035 TPD52-034 80177993-80231172 processed_transcript
  ENST00000520527 TPD52-005 80036585-80080816 protein_coding
  ENST00000520741 TPD52-019 80064463-80080613 retained_intron
  ENST00000520795 TPD52-012 80053279-80171383 protein_coding
  ENST00000520877 TPD52-014 80037886-80051401 processed_transcript
  ENST00000521241 TPD52-021 80038217-80171573 nonsense_mediated_decay
  ENST00000521354 TPD52-017 80037883-80171556 nonsense_mediated_decay
  ENST00000521561 TPD52-013 80064475-80158887 processed_transcript
  ENST00000521618 TPD52-015 80037948-80042911 retained_intron
  ENST00000522364 TPD52-020 80051478-80080614 retained_intron
  ENST00000523193 TPD52-016 80037741-80051859 retained_intron
  ENST00000523319 TPD52-011 80037866-80064670 retained_intron
  ENST00000523395 TPD52-009 80037677-80051416 processed_transcript
  ENST00000523564 TPD52-035 80177657-80218530 processed_transcript
  ENST00000523753 TPD52-028 80044170-80171508 nonsense_mediated_decay
  ENST00000523783 TPD52-018 80066892-80080396 processed_transcript
  ENST00000524194 TPD52-024 80038202-80053430 retained_intron
  ENST00000602950 TPD52-033 80183021-80231219 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379096ENST00000379097ENST00000518937ENST00000520527ENST00000520741
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379096 0.860±0.00 N/A N/A 5.880±2.36 3.873±2.26 4.366±1.20 N/A 3.383±1.63 1.218±0.00 2.125±0.45 N/A 2.391±1.75 1.695±0.31 1.264±0.00
ENST00000379097 1.412±0.00 7.749±0.00 4.429±0.00 N/A 11.029±7.36 13.242±4.63 4.025±0.00 20.301±0.00 7.159±5.60 3.760±0.00 1.958±0.00 6.084±3.97 6.914±0.35 2.034±0.00
ENST00000518937 N/A N/A N/A 14.160±0.27 N/A 9.549±0.00 0.668±0.00 3.920±0.00 2.170±0.00 4.983±0.00 N/A 11.422±9.97 4.495±2.37 1.675±0.00
ENST00000520527 N/A N/A N/A 16.997±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520741 N/A N/A N/A N/A N/A 114.815±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LP CIL_0008LP_0001 VISTA 8:79662126-80264511
CIL_0001NG CIL_0001NG_0001 CGP 8:80034868-80526265

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0008284 IEA positive regulation of cell proliferation
GO:0009653 TAS anatomical structure morphogenesis
GO:0030183 IEP B cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0046903 TAS secretion
GO:0046982 IDA protein heterodimerization activity
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061713 tpd52 tumor protein D52 protein_coding Danio_rerio
ENSMUSG00000027506 Tpd52 tumor protein D52 protein_coding Mus_musculus

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