C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor protein D52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518937 TPD52-001 ENSG00000076554 9606 - 8:80036100-80171659 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000518937
Transcript ID Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000518937 14.160±0.27 9.549±0.00 0.668±0.00 3.920±0.00 2.170±0.00 4.983±0.00 11.422±9.97 4.495±2.37 1.675±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LP CIL_0008LP_0001 VISTA 8:79662126-80264511
CIL_0001NG CIL_0001NG_0001 CGP 8:80034868-80526265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0009653 TAS anatomical structure morphogenesis
GO:0030183 IEP B cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0046903 TAS secretion
GO:0046982 IDA protein heterodimerization activity
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094381 Tpd52-008 protein_coding Mus_musculus 0 702
ENSMUST00000091355 Tpd52-003 protein_coding Mus_musculus 0 586
ENSMUST00000063496 Tpd52-011 protein_coding Mus_musculus 0 394
ENSMUST00000120143 Tpd52-001 protein_coding Mus_musculus 0 363
ENSMUST00000178097 Tpd52-ps-201 pseudogene Mus_musculus 0 342
ENSMUST00000145905 Tpd52-009 protein_coding Mus_musculus 0 326
ENSMUST00000134788 Tpd52-004 protein_coding Mus_musculus 0 324
ENSMUST00000121038 Tpd52-006 protein_coding Mus_musculus 0 322
ENSMUST00000091354 Tpd52-002 protein_coding Mus_musculus 0 322
ENSMUST00000124956 Tpd52-007 protein_coding Mus_musculus 0 228

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