C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: XPA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000076924 XAB2 9606 - 19:7619525-7629565 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358368 XAB2-001 7619525-7629565 protein_coding
  ENST00000595288 XAB2-002 7619526-7628270 retained_intron
  ENST00000596134 XAB2-003 7620893-7621533 retained_intron
  ENST00000600230 XAB2-004 7620275-7621297 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358368ENST00000600230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358368 19.661±0.00 26.292±0.00 3.258±0.00 9.729±5.11 10.272±7.26 12.838±8.73 4.386±2.02 18.329±0.00 5.097±0.57 12.315±7.21 14.868±11.01 24.943±17.84 25.696±4.25 45.246±7.90
ENST00000600230 N/A N/A N/A N/A N/A N/A N/A N/A 3.151±0.00 N/A 2.671±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043E CIL_00043E_0001 CGP 19:7595902-7629565
CIL_000438 CIL_000438_0001 CGP 19:7619525-7631956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001824 IEA blastocyst development
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IC nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS DNA repair
GO:0006283 IDA transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IDA transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0016020 IDA membrane
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007092 xab2 XPA binding protein 2 protein_coding Danio_rerio
ENSMUSG00000019470 Xab2 XPA binding protein 2 protein_coding Mus_musculus

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