C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: XPA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019470 Xab2 10090 - 8:3608421-3621316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019614 Xab2-001 3610087-3621316 protein_coding
  ENSMUST00000159235 Xab2-004 3615995-3621282 nonsense_mediated_decay
  ENSMUST00000159548 Xab2-005 3614317-3621270 protein_coding
  ENSMUST00000159909 Xab2-003 3610090-3621302 retained_intron
  ENSMUST00000163038 Xab2-002 3608421-3621305 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019614ENSMUST00000159909ENSMUST00000163038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019614 29.873±6.62 17.906±9.58 26.453±6.88 21.725±4.92 23.946±5.59 20.514±2.47 10.852±2.00 16.035±1.05 17.271±8.81 29.492±1.88 5.104±0.52 42.290±11.55 26.215±6.85 28.509±5.20
ENSMUST00000159909 N/A 3.942±0.45 N/A N/A 5.614±1.29 N/A 1.389±0.00 N/A N/A N/A 0.790±0.16 7.140±0.66 N/A N/A
ENSMUST00000163038 N/A N/A N/A 3.870±0.96 N/A 6.647±0.55 N/A 3.949±0.41 1.728±0.24 N/A N/A 2.505±0.13 5.227±1.16 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043E CIL_00043E_0002 CGP 8:3587450-3621316
CIL_000438 CIL_000438_0002 CGP 8:3608421-3624231

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001824 IMP blastocyst development
GO:0003674 ND molecular_function
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0006351 ISS transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007092 xab2 XPA binding protein 2 protein_coding Danio_rerio
ENSG00000076924 XAB2 XPA binding protein 2 protein_coding Homo_sapiens

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