C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: XPA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358368 XAB2-001 ENSG00000076924 9606 - 19:7619525-7629565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358368 19.661±0.00 26.292±0.00 3.258±0.00 9.729±5.11 10.272±7.26 12.838±8.73 4.386±2.02 18.329±0.00 5.097±0.57 12.315±7.21 14.868±11.01 24.943±17.84 25.696±4.25 45.246±7.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043E CIL_00043E_0001 CGP 19:7595902-7629565
CIL_000438 CIL_000438_0001 CGP 19:7619525-7631956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001824 IEA blastocyst development
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IC nucleus
GO:0005654 TAS nucleoplasm
GO:0006281 TAS DNA repair
GO:0006283 IDA transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IDA transcription, DNA-templated
GO:0006396 IEA RNA processing
GO:0016020 IDA membrane
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019614 Xab2-001 protein_coding Mus_musculus 0 3214
ENSMUST00000163038 Xab2-002 retained_intron Mus_musculus 0 1729
ENSMUST00000159909 Xab2-003 retained_intron Mus_musculus 0 1480
ENSDART00000011780 xab2-001 protein_coding Danio_rerio 0 1133
ENSMUST00000159548 Xab2-005 protein_coding Mus_musculus 0 800
ENSMUST00000159235 Xab2-004 nonsense_mediated_decay Mus_musculus 0 776

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