C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: general transcription factor IIIC, polypeptide 1, alpha 220kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077235 GTF3C1 9606 - 16:27459555-27549913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356183 GTF3C1-001 27460678-27549906 protein_coding
  ENST00000561623 GTF3C1-002 27460613-27549913 protein_coding
  ENST00000562609 GTF3C1-004 27461296-27466327 retained_intron
  ENST00000564664 GTF3C1-014 27471791-27489123 nonsense_mediated_decay
  ENST00000564747 GTF3C1-013 27460676-27463473 retained_intron
  ENST00000566779 GTF3C1-010 27480716-27484297 retained_intron
  ENST00000567806 GTF3C1-006 27459555-27460980 processed_transcript
  ENST00000567843 GTF3C1-007 27469402-27470719 processed_transcript
  ENST00000568569 GTF3C1-011 27481115-27488231 protein_coding
  ENST00000569394 GTF3C1-009 27470223-27478594 retained_intron
  ENST00000569653 GTF3C1-008 27461097-27502916 protein_coding
  ENST00000570129 GTF3C1-012 27483138-27486063 processed_transcript
  ENST00000571886 GTF3C1-016 27470109-27476528 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356183ENST00000561623ENST00000567843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356183 6.287±0.00 5.906±0.00 N/A 5.628±4.00 7.054±0.00 4.489±0.00 6.741±0.00 9.016±0.00 2.767±0.00 5.118±0.00 4.954±3.92 5.795±3.00 3.762±0.21 9.959±1.35
ENST00000561623 2.818±0.00 N/A 2.438±0.00 2.674±0.09 2.188±0.00 2.392±0.00 2.317±0.61 1.542±0.00 2.302±0.00 3.599±0.00 6.392±0.00 5.480±3.57 4.060±1.02 3.491±0.00
ENST00000567843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.693±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FH CIL_0008FH_0001 VISTA 16:27337075-27938252
CIL_00042S CIL_00042S_0001 CGP 16:27402162-27549913
CIL_000435 CIL_000435_0001 CGP 16:27459555-27780369

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0009303 TAS rRNA transcription
GO:0009304 TAS tRNA transcription
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090506 GTF3C1 general transcription factor IIIC, polypeptide 1, alpha 220kDa protein_coding Danio_rerio
ENSMUSG00000032777 Gtf3c1 general transcription factor III C 1 protein_coding Mus_musculus

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