C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 1, alpha 220kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561623 GTF3C1-002 ENSG00000077235 9606 - 16:27460613-27549913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000561623
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000561623 2.818±0.00 2.438±0.00 2.674±0.09 2.188±0.00 2.392±0.00 2.317±0.61 1.542±0.00 2.302±0.00 3.599±0.00 6.392±0.00 5.480±3.57 4.060±1.02 3.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FH CIL_0008FH_0001 VISTA 16:27337075-27938252
CIL_00042S CIL_00042S_0001 CGP 16:27402162-27549913
CIL_000435 CIL_000435_0001 CGP 16:27459555-27780369

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000127 IDA transcription factor TFIIIC complex
GO:0003677 IC DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006351 IC transcription, DNA-templated
GO:0006383 IC transcription from RNA polymerase III promoter
GO:0009303 TAS rRNA transcription
GO:0009304 TAS tRNA transcription
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0042791 IC 5S class rRNA transcription from RNA polymerase III type 1 promoter
GO:0042797 IC tRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055506 Gtf3c1-201 protein_coding Mus_musculus 0 4196

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