C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008FH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm174 VISTA 9606 16:27337075-27938252
GeneTranscriptPositionBiotype
ENSG00000047578 (KIAA0556)
KIAA0556 		ENST00000261588 (KIAA0556-001) 27550152-27780369 protein_coding
ENST00000562207 (KIAA0556-006) 27701434-27703954 retained_intron
ENST00000564749 (KIAA0556-003) 27628588-27654698 retained_intron
ENST00000565672 (KIAA0556-005) 27573922-27677931 nonsense_mediated_decay
ENST00000566023 (KIAA0556-002) 27550133-27574295 retained_intron
ENST00000567894 (KIAA0556-004) 27632464-27727873 processed_transcript
ENST00000568258 (KIAA0556-009) 27573907-27677818 protein_coding
ENST00000568622 (KIAA0556-008) 27776866-27778729 retained_intron
ENST00000573850 (KIAA0556-010) 27698328-27755752 retained_intron
ENST00000618117 (KIAA0556-011) 27618470-27631254 protein_coding
ENSG00000077235 (GTF3C1)
general transcription factor IIIC, polypeptide 1, alpha 220kDa 		ENST00000356183 (GTF3C1-001) 27460678-27549906 protein_coding
ENST00000561623 (GTF3C1-002) 27460613-27549913 protein_coding
ENST00000562609 (GTF3C1-004) 27461296-27466327 retained_intron
ENST00000564664 (GTF3C1-014) 27471791-27489123 nonsense_mediated_decay
ENST00000564747 (GTF3C1-013) 27460676-27463473 retained_intron
ENST00000566779 (GTF3C1-010) 27480716-27484297 retained_intron
ENST00000567806 (GTF3C1-006) 27459555-27460980 processed_transcript
ENST00000567843 (GTF3C1-007) 27469402-27470719 processed_transcript
ENST00000568569 (GTF3C1-011) 27481115-27488231 protein_coding
ENST00000569394 (GTF3C1-009) 27470223-27478594 retained_intron
ENST00000569653 (GTF3C1-008) 27461097-27502916 protein_coding
ENST00000570129 (GTF3C1-012) 27483138-27486063 processed_transcript
ENST00000571886 (GTF3C1-016) 27470109-27476528 nonsense_mediated_decay
ENSG00000077238 (IL4R)
interleukin 4 receptor 		ENST00000170630 (IL4R-201) 27341289-27364777 protein_coding
ENST00000395762 (IL4R-001) 27313913-27364778 protein_coding
ENST00000543915 (IL4R-004) 27313926-27364778 protein_coding
ENST00000561742 (IL4R-006) 27313926-27340234 protein_coding
ENST00000561946 (IL4R-013) 27314030-27345090 retained_intron
ENST00000562142 (IL4R-009) 27313923-27342241 protein_coding
ENST00000562968 (IL4R-012) 27344908-27345602 protein_coding
ENST00000563002 (IL4R-007) 27313992-27345020 protein_coding
ENST00000563787 (IL4R-008) 27315397-27345039 retained_intron
ENST00000563886 (IL4R-016) 27355348-27362296 retained_intron
ENST00000563926 (IL4R-010) 27313926-27342154 nonsense_mediated_decay
ENST00000565179 (IL4R-018) 27352550-27362373 protein_coding
ENST00000565352 (IL4R-017) 27352675-27364297 protein_coding
ENST00000565696 (IL4R-011) 27342031-27346618 retained_intron
ENST00000565915 (IL4R-015) 27354083-27362483 processed_transcript
ENST00000566117 (IL4R-005) 27313668-27345020 protein_coding
ENST00000566318 (IL4R-014) 27313938-27355876 nonsense_mediated_decay
ENST00000568746 (IL4R-003) 27313934-27363903 nonsense_mediated_decay
ENSG00000103522 (IL21R)
interleukin 21 receptor 		ENST00000337929 (IL21R-001) 27402162-27452042 protein_coding
ENST00000395754 (IL21R-003) 27427244-27450485 protein_coding
ENST00000561953 (IL21R-004) 27442670-27444690 retained_intron
ENST00000564089 (IL21R-006) 27402174-27450073 protein_coding
ENST00000564583 (IL21R-005) 27443967-27448674 processed_transcript
ENSG00000169181 (GSG1L)
GSG1-like 		ENST00000380897 (GSG1L-001) 27790894-27888157 protein_coding
ENST00000395724 (GSG1L-003) 27790891-28063501 protein_coding
ENST00000447459 (GSG1L-002) 27787535-28063509 protein_coding
ENST00000562611 (GSG1L-005) 27823876-28063188 nonsense_mediated_decay
ENST00000569166 (GSG1L-004) 27791370-27884570 protein_coding
ENSG00000221528 (AC016597.1)
 ENST00000408601 (AC016597.1-201) 27661900-27662018 miRNA
ENSG00000259954 (IL21R-AS1)
IL21R antisense RNA 1 		ENST00000563191 (IL21R-AS1-001) 27447669-27453393 antisense
ENSG00000261736 (AC002551.1)
 ENST00000569881 (AC002551.1-001) 27643199-27644663 sense_intronic
ENSG00000273553 (CTD-2049O4.2)
 ENST00000613256 (CTD-2049O4.2-001) 27687182-27687522 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0008FH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm174 VISTA 10090 7:125464047-126065353
GeneTranscriptPositionBiotype
ENSMUSG00000030745 (Il21r)
interleukin 21 receptor 		ENSMUST00000033000 (Il21r-201) 125603429-125633570 protein_coding
ENSMUSG00000030748 (Il4ra)
interleukin 4 receptor, alpha 		ENSMUST00000033004 (Il4ra-201) 125552282-125579472 protein_coding
ENSMUSG00000030750 (Nsmce1)
non-SMC element 1 homolog (S. cerevisiae) 		ENSMUST00000033006 (Nsmce1-001) 125467640-125491596 protein_coding
ENSMUST00000138616 (Nsmce1-002) 125471113-125491399 protein_coding
ENSMUST00000149289 (Nsmce1-003) 125471167-125478559 processed_transcript
ENSMUSG00000032743 (D430042O09Rik)
RIKEN cDNA D430042O09 gene 		ENSMUST00000069660 (D430042O09Rik-001) 125707915-125874793 protein_coding
ENSMUST00000122337 (D430042O09Rik-002) 125786255-125861996 protein_coding
ENSMUST00000124223 (D430042O09Rik-003) 125829667-125874793 protein_coding
ENSMUST00000132204 (D430042O09Rik-007) 125860682-125872252 protein_coding
ENSMUST00000142464 (D430042O09Rik-004) 125707915-125761832 protein_coding
ENSMUST00000148701 (D430042O09Rik-005) 125707991-125761769 protein_coding
ENSMUST00000155059 (D430042O09Rik-006) 125865271-125868064 retained_intron
ENSMUSG00000032777 (Gtf3c1)
general transcription factor III C 1 		ENSMUST00000055506 (Gtf3c1-201) 125640955-125707780 protein_coding
ENSMUSG00000046182 (Gsg1l)
GSG1-like 		ENSMUST00000073935 (Gsg1l-201) 125878419-126082411 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FH_0001ENSG00000047578ENST00000261588ENST00000562207ENST00000564749ENST00000565672ENST00000566023ENST00000567894ENST00000568258ENST00000568622ENST00000573850ENST00000618117ENSG00000077235ENST00000356183ENST00000561623ENST00000562609ENST00000564664ENST00000564747ENST00000566779ENST00000567806ENST00000567843ENST00000568569ENST00000569394ENST00000569653ENST00000570129ENST00000571886ENSG00000077238ENST00000170630ENST00000395762ENST00000543915ENST00000561742ENST00000561946ENST00000562142ENST00000562968ENST00000563002ENST00000563787ENST00000563886ENST00000563926ENST00000565179ENST00000565352ENST00000565696ENST00000565915ENST00000566117ENST00000566318ENST00000568746ENSG00000103522ENST00000337929ENST00000395754ENST00000561953ENST00000564089ENST00000564583ENSG00000169181ENST00000380897ENST00000395724ENST00000447459ENST00000562611ENST00000569166ENSG00000221528ENST00000408601ENSG00000259954ENST00000563191ENSG00000261736ENST00000569881ENSG00000273553ENST00000613256CIL_0008FH_0002ENSMUSG00000030745ENSMUST00000033000ENSMUSG00000030748ENSMUST00000033004ENSMUSG00000030750ENSMUST00000033006ENSMUST00000138616ENSMUST00000149289ENSMUSG00000032743ENSMUST00000069660ENSMUST00000122337ENSMUST00000124223ENSMUST00000132204ENSMUST00000142464ENSMUST00000148701ENSMUST00000155059ENSMUSG00000032777ENSMUST00000055506ENSMUSG00000046182ENSMUST00000073935
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FH_0001ENSG00000047578ENST00000261588ENST00000567894ENST00000568258ENST00000573850ENST00000618117ENSG00000077235ENST00000356183ENST00000561623ENST00000567843ENSG00000077238ENST00000170630ENST00000395762ENST00000543915ENST00000563886ENST00000563926ENST00000568746ENSG00000103522ENST00000337929ENST00000395754ENST00000561953ENST00000564089ENST00000564583ENSG00000169181ENST00000380897ENST00000395724ENST00000447459ENST00000562611ENST00000569166ENSG00000221528ENST00000408601ENSG00000259954ENST00000563191ENSG00000261736ENST00000569881ENSG00000273553ENST00000613256CIL_0008FH_0002ENSMUSG00000030745ENSMUST00000033000ENSMUSG00000030748ENSMUST00000033004ENSMUSG00000030750ENSMUST00000033006ENSMUST00000138616ENSMUSG00000032743ENSMUST00000069660ENSMUST00000122337ENSMUST00000124223ENSMUSG00000032777ENSMUST00000055506ENSMUSG00000046182ENSMUST00000073935
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000047578 ENST00000261588 0.475±0.00 1.435±0.00 0.338±0.00 0.847±0.00 1.727±0.16 0.517±0.00 0.407±0.00 2.006±0.00 0.241±0.11 N/A 1.011±0.00 1.541±0.96 1.165±0.28 1.462±0.15
ENST00000562207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A
ENST00000568258 N/A N/A N/A N/A N/A N/A 0.927±0.00 N/A N/A N/A 1.324±0.00 N/A N/A N/A
ENST00000568622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A
ENST00000618117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.619±0.00 N/A N/A N/A
ENSG00000077235 ENST00000356183 6.287±0.00 5.906±0.00 N/A 5.628±4.00 7.054±0.00 4.489±0.00 6.741±0.00 9.016±0.00 2.767±0.00 5.118±0.00 4.954±3.92 5.795±3.00 3.762±0.21 9.959±1.35
ENST00000561623 2.818±0.00 N/A 2.438±0.00 2.674±0.09 2.188±0.00 2.392±0.00 2.317±0.61 1.542±0.00 2.302±0.00 3.599±0.00 6.392±0.00 5.480±3.57 4.060±1.02 3.491±0.00
ENST00000562609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.693±0.00 N/A N/A
ENST00000568569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000077238 ENST00000170630 N/A N/A N/A 1.234±1.20 3.094±1.07 2.262±0.84 0.086±0.00 N/A 10.964±0.00 13.792±0.00 0.259±0.00 6.696±0.00 14.425±5.10 1.998±0.00
ENST00000395762 8.102±0.00 9.960±0.00 N/A 3.538±0.00 1.823±0.68 3.152±1.50 1.636±0.00 3.735±0.71 3.083±1.58 N/A 0.144±0.00 7.635±3.78 6.800±1.87 N/A
ENST00000543915 7.847±0.00 9.651±0.00 N/A 1.763±0.00 N/A 1.099±0.00 2.580±0.00 5.303±0.00 3.876±0.00 21.048±0.00 0.127±0.00 4.007±2.23 6.064±0.94 2.764±0.74
ENST00000561742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563886 N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563926 N/A N/A 0.992±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.708±0.00 N/A N/A N/A
ENSG00000103522 ENST00000337929 0.054±0.00 0.472±0.00 N/A N/A 0.169±0.14 0.110±0.00 0.026±0.00 N/A 0.054±0.03 0.405±0.00 N/A 0.092±0.06 0.154±0.00 N/A
ENST00000395754 N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A N/A 0.566±0.00 N/A N/A 0.627±0.00 N/A
ENST00000561953 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.789±0.00 N/A N/A N/A 3.854±2.80
ENST00000564089 N/A N/A N/A 0.016±0.00 N/A 0.033±0.00 N/A N/A N/A 0.508±0.00 N/A N/A N/A N/A
ENST00000564583 N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A 0.074±0.00 N/A N/A N/A N/A N/A
ENSG00000169181 ENST00000380897 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.364±0.00 N/A 0.086±0.00 0.815±0.00 0.417±0.04
ENST00000395724 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A 0.240±0.00 0.370±0.00 N/A
ENST00000447459 N/A 0.010±0.00 N/A 1.243±0.38 0.007±0.00 0.038±0.00 0.464±0.00 0.024±0.00 0.009±0.00 0.030±0.01 N/A 0.065±0.04 N/A 0.085±0.00
ENST00000562611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.04
ENST00000569166 N/A N/A N/A N/A N/A 0.773±0.00 N/A N/A N/A N/A N/A N/A 0.525±0.11 0.429±0.00
ENSG00000221528 ENST00000408601 N/A N/A N/A N/A N/A N/A 0.190±0.00 0.135±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000259954 ENST00000563191 0.114±0.00 1.673±0.00 N/A 0.333±0.29 0.169±0.08 0.066±0.00 0.069±0.02 0.580±0.00 0.047±0.00 0.859±0.00 0.013±0.00 0.240±0.15 0.369±0.24 2.131±1.46
ENSG00000261736 ENST00000569881 0.066±0.00 0.397±0.00 N/A 0.195±0.00 0.393±0.24 0.538±0.00 0.275±0.00 0.236±0.00 0.283±0.00 0.173±0.00 N/A 0.195±0.11 N/A 0.250±0.00
ENSG00000273553 ENST00000613256 N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030745 ENSMUST00000033000 0.861±0.46 0.828±0.32 0.551±0.21 0.168±0.06 18.306±9.51 1.377±0.63 0.461±0.07 0.958±0.69 0.665±0.42 2.145±0.38 0.608±0.97 1.187±0.50 0.655±0.36 0.039±0.02
ENSMUSG00000030748 ENSMUST00000033004 22.208±14.13 35.965±8.77 1.601±0.24 0.765±0.24 33.034±11.18 13.975±2.52 2.748±0.20 3.989±1.14 4.597±3.41 20.344±6.32 1.418±0.55 23.832±9.09 2.596±1.38 0.973±0.75
ENSMUSG00000030750 ENSMUST00000033006 23.432±3.52 38.857±3.83 23.176±3.77 18.126±12.18 25.626±3.14 18.238±1.33 20.332±1.03 21.457±1.63 21.957±12.62 22.998±2.15 4.955±1.50 37.064±13.23 18.768±17.16 83.756±31.97
ENSMUST00000138616 N/A N/A N/A 16.917±0.00 N/A N/A N/A N/A N/A N/A N/A 52.124±0.00 69.982±20.19 104.118±0.00
ENSMUST00000149289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032743 ENSMUST00000069660 2.882±1.59 1.221±0.00 2.201±0.31 2.922±1.88 2.471±0.82 3.392±1.17 1.085±0.60 2.633±1.17 1.323±0.53 2.518±1.32 1.030±0.30 6.019±1.67 3.084±1.48 9.959±2.98
ENSMUST00000122337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A
ENSMUST00000124223 1.776±0.82 3.582±1.95 2.146±0.00 2.064±0.63 2.704±0.60 3.206±0.47 1.421±0.34 2.456±0.66 1.444±0.87 2.995±0.73 0.413±0.14 4.683±1.68 1.200±0.02 8.135±0.50
ENSMUST00000132204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155059 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032777 ENSMUST00000055506 8.085±2.35 14.000±1.19 6.390±0.23 23.709±10.87 8.100±2.14 11.464±4.48 6.955±1.77 10.657±1.39 4.706±1.50 14.841±1.33 6.926±0.39 23.960±8.98 11.331±6.16 12.979±3.86
ENSMUSG00000046182 ENSMUST00000073935 0.339±0.07 76.215±10.47 0.131±0.09 12.026±6.00 0.088±0.04 0.298±0.07 5.033±0.86 0.201±0.08 0.096±0.05 2.221±0.38 0.022±0.01 8.668±2.44 0.290±0.36 0.260±0.09

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