C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 33
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077254 USP33 9606 - 1:77695987-77759852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357428 USP33-201 77695991-77745462 protein_coding
  ENST00000370792 USP33-003 77711652-77759852 protein_coding
  ENST00000370793 USP33-002 77695991-77759852 protein_coding
  ENST00000370794 USP33-001 77695987-77759852 protein_coding
  ENST00000461986 USP33-006 77717645-77722399 retained_intron
  ENST00000462192 USP33-007 77718024-77721738 retained_intron
  ENST00000472462 USP33-008 77711785-77714917 retained_intron
  ENST00000477949 USP33-009 77711502-77713508 retained_intron
  ENST00000481579 USP33-004 77695991-77728336 protein_coding
  ENST00000498328 USP33-005 77717540-77718712 retained_intron
  ENST00000524536 USP33-010 77734357-77759689 protein_coding
  ENST00000524778 USP33-012 77739398-77759820 protein_coding
  ENST00000525113 USP33-011 77739311-77759846 processed_transcript
  ENST00000527390 USP33-016 77711665-77721205 nonsense_mediated_decay
  ENST00000528150 USP33-014 77739331-77759811 processed_transcript
  ENST00000530709 USP33-013 77739377-77759388 protein_coding
  ENST00000531637 USP33-015 77717778-77721239 retained_intron
  ENST00000533928 USP33-017 77697609-77701651 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357428ENST00000370792ENST00000370793ENST00000370794ENST00000481579ENST00000524536ENST00000527390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357428 1.020±0.00 N/A 0.552±0.00 9.972±0.00 1.766±0.00 1.300±0.00 N/A N/A 3.528±0.00 1.216±0.61 N/A 2.345±0.27 5.695±2.14 N/A
ENST00000370792 1.797±0.00 N/A N/A 2.442±0.00 N/A 2.585±1.41 N/A N/A 2.523±0.00 1.400±0.28 1.259±0.04 N/A 3.209±0.00 6.128±0.00
ENST00000370793 N/A N/A N/A 4.032±0.00 N/A N/A 1.034±0.00 2.109±0.00 N/A N/A N/A 0.731±0.00 N/A 3.866±0.00
ENST00000370794 5.114±0.00 N/A N/A 7.954±0.00 5.871±4.61 2.462±1.06 3.050±1.69 2.981±0.00 0.790±0.00 2.476±0.00 2.849±0.00 4.161±1.58 3.271±0.56 4.983±0.00
ENST00000481579 1.903±0.00 3.607±0.00 N/A 4.045±0.00 5.330±0.00 1.632±0.00 N/A 5.567±0.00 1.760±0.00 N/A 1.126±0.00 2.083±0.00 2.477±0.30 3.773±0.00
ENST00000524536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.836±0.00
ENST00000527390 N/A N/A N/A N/A N/A N/A N/A 6.723±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0001 VISTA 1:77533579-78136618
CIL_0007KB CIL_0007KB_0001 UCNEbase 1:77564480-77948632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IPI G-protein coupled receptor binding
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 TAS:IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005737 TAS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005813 IDA centrosome
GO:0006511 IEA:TAS ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0007411 ISS axon guidance
GO:0008270 IEA:IDA zinc ion binding
GO:0008277 IMP regulation of G-protein coupled receptor protein signaling pathway
GO:0016477 ISS cell migration
GO:0016579 IDA protein deubiquitination
GO:0030891 TAS VCB complex
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0044297 IEA cell body
GO:0051298 IMP centrosome duplication
GO:0070536 IDA protein K63-linked deubiquitination
GO:0071108 IDA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016163 usp33 ubiquitin specific peptidase 33 protein_coding Danio_rerio
ENSMUSG00000025437 Usp33 ubiquitin specific peptidase 33 protein_coding Mus_musculus

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