C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 33
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025437 Usp33 10090 + 3:152346478-152393612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026507 Usp33-001 152346478-152393612 protein_coding
  ENSMUST00000117492 Usp33-002 152346489-152393330 protein_coding
  ENSMUST00000123237 Usp33-003 152346512-152371905 nonsense_mediated_decay
  ENSMUST00000138575 Usp33-005 152361898-152368491 processed_transcript
  ENSMUST00000142969 Usp33-004 152346515-152358348 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026507ENSMUST00000117492ENSMUST00000138575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026507 1.597±0.00 1.738±0.50 1.941±0.61 4.490±0.94 1.717±0.66 1.609±0.37 0.805±0.05 1.637±0.00 2.369±0.95 3.596±0.00 0.871±0.11 1.640±0.65 2.973±0.37 N/A
ENSMUST00000117492 5.999±0.35 3.768±1.11 11.431±1.27 27.675±2.71 3.626±1.83 5.051±1.78 3.048±0.51 6.274±0.49 7.852±4.57 7.210±2.10 4.109±0.44 9.901±9.34 14.646±2.17 3.039±0.15
ENSMUST00000138575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.189±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YZ CIL_0008YZ_0002 VISTA 3:152003123-152605850
CIL_0007KB CIL_0007KB_0002 UCNEbase 3:152232542-152459476
CIL_0002YR CIL_0002YR_0002 CGP 3:152273459-152393612
CIL_0002Y2 CIL_0002Y2_0002 CGP 3:152346478-152462826

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001664 IEA G-protein coupled receptor binding
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005813 ISS centrosome
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006897 IEA endocytosis
GO:0007411 IMP axon guidance
GO:0008152 ISA metabolic process
GO:0008270 ISS zinc ion binding
GO:0008277 ISS regulation of G-protein coupled receptor protein signaling pathway
GO:0016477 IMP cell migration
GO:0016579 ISS protein deubiquitination
GO:0044297 IDA cell body
GO:0051298 ISS centrosome duplication
GO:0070536 ISS protein K63-linked deubiquitination
GO:0071108 ISS protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016163 usp33 ubiquitin specific peptidase 33 protein_coding Danio_rerio
ENSG00000077254 USP33 ubiquitin specific peptidase 33 protein_coding Homo_sapiens

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