| Source ID |
Type |
Tax ID |
Position |
| AK5 |
UCNEbase |
7955 |
2:8446734-8446897  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007KB_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000036549' => 'zinc finger, ZZ-type containing 3',
'ENSG00000077254' => 'ubiquitin specific peptidase 33',
'ENSG00000162613' => 'far upstream element (FUSE) binding protein 1',
'ENSG00000162614' => 'nexilin (F actin binding protein)',
'ENSG00000180488' => 'family with sequence similarity 73, member A',
'ENSG00000219201' => null,
'ENSG00000222849' => 'RNA, 5S ribosomal pseudogene 21',
'ENSG00000232015' => 'heat shock 10kDa protein 1 pseudogene 25',
'ENSG00000232672' => null,
'ENSG00000235613' => 'nuclear speckle splicing regulatory protein 1 pseudogene 1',
'ENSG00000235927' => 'NEXN antisense RNA 1',
'ENSG00000243437' => 'RNA, 7SL, cytoplasmic 370, pseudogene',
'ENSG00000251785' => 'RNA, 5S ribosomal pseudogene 20',
'ENSMUSG00000025437' => 'ubiquitin specific peptidase 33',
'ENSMUSG00000028034' => 'far upstream element (FUSE) binding protein 1',
'ENSMUSG00000039068' => 'zinc finger, ZZ domain containing 3',
'ENSMUSG00000039103' => 'nexilin',
'ENSMUSG00000054942' => 'family with sequence similarity 73, member A'
),
'gene_name_arr' => array(
'ENSG00000036549' => 'ZZZ3',
'ENSG00000077254' => 'USP33',
'ENSG00000162613' => 'FUBP1',
'ENSG00000162614' => 'NEXN',
'ENSG00000180488' => 'FAM73A',
'ENSG00000219201' => 'RP11-181C21.4',
'ENSG00000222849' => 'RNA5SP21',
'ENSG00000232015' => 'HSPE1P25',
'ENSG00000232672' => 'RP4-706L14.2',
'ENSG00000235613' => 'NSRP1P1',
'ENSG00000235927' => 'NEXN-AS1',
'ENSG00000243437' => 'RN7SL370P',
'ENSG00000251785' => 'RNA5SP20',
'ENSMUSG00000025437' => 'Usp33',
'ENSMUSG00000028034' => 'Fubp1',
'ENSMUSG00000039068' => 'Zzz3',
'ENSMUSG00000039103' => 'Nexn',
'ENSMUSG00000054942' => 'Fam73a'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 64 => 'Brain',
(int) 91 => 'Breast',
(int) 120 => 'Colon',
(int) 146 => 'Heart',
(int) 176 => 'Kidney',
(int) 203 => 'Liver',
(int) 233 => 'Lung',
(int) 255 => 'Muscle',
(int) 278 => 'Ovary',
(int) 309 => 'Placenta',
(int) 335 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 82,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000370798' => array(
'start' => '77564888',
'end' => '77683419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-002'
),
'ENST00000370801' => array(
'start' => '77564500',
'end' => '77682658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-001'
),
'ENST00000414381' => array(
'start' => '77633246',
'end' => '77683374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-009'
),
'ENST00000433749' => array(
'start' => '77633182',
'end' => '77682675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-010'
),
'ENST00000458763' => array(
'start' => '77676982',
'end' => '77682675',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-008'
),
'ENST00000463166' => array(
'start' => '77633312',
'end' => '77683403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-006'
),
'ENST00000469944' => array(
'start' => '77640954',
'end' => '77682643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-007'
),
'ENST00000474746' => array(
'start' => '77581818',
'end' => '77585059',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-011'
),
'ENST00000476195' => array(
'start' => '77581018',
'end' => '77585043',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-005'
),
'ENST00000476275' => array(
'start' => '77564506',
'end' => '77632876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-003'
),
'ENST00000481346' => array(
'start' => '77562416',
'end' => '77631921',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-004'
),
'ENST00000357428' => array(
'start' => '77695991',
'end' => '77745462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-201'
),
'ENST00000370792' => array(
'start' => '77711652',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-003'
),
'ENST00000370793' => array(
'start' => '77695991',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-002'
),
'ENST00000370794' => array(
'start' => '77695987',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-001'
),
'ENST00000461986' => array(
'start' => '77717645',
'end' => '77722399',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-006'
),
'ENST00000462192' => array(
'start' => '77718024',
'end' => '77721738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-007'
),
'ENST00000472462' => array(
'start' => '77711785',
'end' => '77714917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-008'
),
'ENST00000477949' => array(
'start' => '77711502',
'end' => '77713508',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-009'
),
'ENST00000481579' => array(
'start' => '77695991',
'end' => '77728336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-004'
),
'ENST00000498328' => array(
'start' => '77717540',
'end' => '77718712',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-005'
),
'ENST00000524536' => array(
'start' => '77734357',
'end' => '77759689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-010'
),
'ENST00000524778' => array(
'start' => '77739398',
'end' => '77759820',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-012'
),
'ENST00000525113' => array(
'start' => '77739311',
'end' => '77759846',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-011'
),
'ENST00000527390' => array(
'start' => '77711665',
'end' => '77721205',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP33-016'
),
'ENST00000528150' => array(
'start' => '77739331',
'end' => '77759811',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-014'
),
'ENST00000530709' => array(
'start' => '77739377',
'end' => '77759388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-013'
),
'ENST00000531637' => array(
'start' => '77717778',
'end' => '77721239',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-015'
),
'ENST00000533928' => array(
'start' => '77697609',
'end' => '77701651',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-017'
),
'ENST00000294623' => array(
'start' => '77946482',
'end' => '77979087',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FUBP1-001'
),
'ENST00000370767' => array(
'start' => '77948405',
'end' => '77979092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-003'
),
'ENST00000370768' => array(
'start' => '77948405',
'end' => '77979086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-002'
),
'ENST00000421641' => array(
'start' => '77965069',
'end' => '77979110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-004'
),
'ENST00000470287' => array(
'start' => '77955255',
'end' => '77960785',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-013'
),
'ENST00000474632' => array(
'start' => '77944055',
'end' => '77947692',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-006'
),
'ENST00000480673' => array(
'start' => '77944055',
'end' => '77946576',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-009'
),
'ENST00000483894' => array(
'start' => '77944055',
'end' => '77945895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-010'
),
'ENST00000487684' => array(
'start' => '77948970',
'end' => '77955458',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-012'
),
'ENST00000488814' => array(
'start' => '77944055',
'end' => '77949267',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-005'
),
'ENST00000489495' => array(
'start' => '77944055',
'end' => '77948333',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-011'
),
'ENST00000492405' => array(
'start' => '77944055',
'end' => '77955282',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-007'
),
'ENST00000492724' => array(
'start' => '77944055',
'end' => '77955339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-008'
),
'ENST00000330010' => array(
'start' => '77888515',
'end' => '77943891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-201'
),
'ENST00000334785' => array(
'start' => '77888628',
'end' => '77943224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-001'
),
'ENST00000342754' => array(
'start' => '77918128',
'end' => '77943895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-005'
),
'ENST00000401035' => array(
'start' => '77888513',
'end' => '77933384',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-002'
),
'ENST00000440324' => array(
'start' => '77888662',
'end' => '77935919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-003'
),
'ENST00000464998' => array(
'start' => '77926569',
'end' => '77935970',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-007'
),
'ENST00000470735' => array(
'start' => '77941711',
'end' => '77942753',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-006'
),
'ENST00000480732' => array(
'start' => '77931662',
'end' => '77943199',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NEXN-004'
),
'ENST00000370791' => array(
'start' => '77779624',
'end' => '77878421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-001'
),
'ENST00000443751' => array(
'start' => '77779624',
'end' => '77879539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-201'
),
'ENST00000476203' => array(
'start' => '77803389',
'end' => '77862215',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FAM73A-002'
),
'ENST00000477627' => array(
'start' => '77779908',
'end' => '77801431',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-003'
),
'ENST00000427577' => array(
'start' => '77810861',
'end' => '77811781',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-181C21.4-001'
),
'ENST00000410917' => array(
'start' => '77779904',
'end' => '77779999',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP21-201'
),
'ENST00000455484' => array(
'start' => '77853355',
'end' => '77853893',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HSPE1P25-001'
),
'ENST00000431536' => array(
'start' => '77773865',
'end' => '77774864',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-706L14.2-001'
),
'ENST00000444067' => array(
'start' => '77847110',
'end' => '77848802',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NSRP1P1-001'
),
'ENST00000421331' => array(
'start' => '77881348',
'end' => '77889539',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-001'
),
'ENST00000597757' => array(
'start' => '77881359',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-002'
),
'ENST00000619246' => array(
'start' => '77882743',
'end' => '77886123',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-003'
),
'ENST00000620892' => array(
'start' => '77882757',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-004'
),
'ENST00000470869' => array(
'start' => '77645324',
'end' => '77645618',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL370P-201'
),
'ENST00000515976' => array(
'start' => '77614869',
'end' => '77614952',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP20-201'
),
'ENSMUST00000026507' => array(
'start' => '152346478',
'end' => '152393612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-001'
),
'ENSMUST00000117492' => array(
'start' => '152346489',
'end' => '152393330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-002'
),
'ENSMUST00000123237' => array(
'start' => '152346512',
'end' => '152371905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Usp33-003'
),
'ENSMUST00000138575' => array(
'start' => '152361898',
'end' => '152368491',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp33-005'
),
'ENSMUST00000142969' => array(
'start' => '152346515',
'end' => '152358348',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp33-004'
),
'ENSMUST00000106121' => array(
'start' => '152210521',
'end' => '152236826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-201'
),
'ENSMUST00000166984' => array(
'start' => '152210458',
'end' => '152236830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-202'
),
'ENSMUST00000089982' => array(
'start' => '152396684',
'end' => '152459477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-002'
),
'ENSMUST00000106100' => array(
'start' => '152396003',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-001'
),
'ENSMUST00000106101' => array(
'start' => '152396694',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-201'
),
'ENSMUST00000106103' => array(
'start' => '152395473',
'end' => '152459474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-003'
),
'ENSMUST00000135044' => array(
'start' => '152457417',
'end' => '152458535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-005'
),
'ENSMUST00000138115' => array(
'start' => '152395525',
'end' => '152427620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-004'
),
'ENSMUST00000150802' => array(
'start' => '152396032',
'end' => '152449128',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-006'
),
'ENSMUST00000046045' => array(
'start' => '152236986',
'end' => '152266320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nexn-201'
),
'ENSMUST00000068243' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-201'
),
'ENSMUST00000073089' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-202'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
'ENSG00000036549' => array(
[maximum depth reached]
),
'ENSG00000077254' => array(
[maximum depth reached]
),
'ENSG00000162613' => array(
[maximum depth reached]
),
'ENSG00000162614' => array(
[maximum depth reached]
),
'ENSG00000180488' => array(
[maximum depth reached]
),
'ENSG00000219201' => array(
[maximum depth reached]
),
'ENSG00000232015' => array(
[maximum depth reached]
),
'ENSG00000232672' => array(
[maximum depth reached]
),
'ENSG00000235613' => array(
[maximum depth reached]
),
'ENSG00000235927' => array(
[maximum depth reached]
),
'ENSG00000243437' => array(
[maximum depth reached]
),
'ENSG00000251785' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Liver',
(int) 2 => 'Ovary',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 7 => 'Breast',
(int) 8 => 'Colon',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Kidney',
(int) 76 => 'Adipose',
(int) 77 => 'Bladder',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Liver',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Liver',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Brain',
(int) 146 => 'Brain',
(int) 147 => 'Colon',
(int) 148 => 'Heart',
(int) 149 => 'Kidney',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Ovary',
(int) 156 => 'Adipose',
(int) 157 => 'Bladder',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis',
(int) 169 => 'Adipose',
(int) 170 => 'Adrenal',
(int) 171 => 'Bladder',
(int) 172 => 'Brain',
(int) 173 => 'Breast',
(int) 174 => 'Heart',
(int) 175 => 'Kidney',
(int) 176 => 'Ovary',
(int) 177 => 'Placenta',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Heart',
(int) 181 => 'Ovary',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Brain',
(int) 186 => 'Breast',
(int) 187 => 'Colon',
(int) 188 => 'Heart',
(int) 189 => 'Kidney',
(int) 190 => 'Liver',
(int) 191 => 'Lung',
(int) 192 => 'Muscle',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Brain',
(int) 198 => 'Breast',
(int) 199 => 'Colon',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Breast',
(int) 213 => 'Colon',
(int) 214 => 'Heart',
(int) 215 => 'Kidney',
(int) 216 => 'Liver',
(int) 217 => 'Lung',
(int) 218 => 'Muscle',
(int) 219 => 'Ovary',
(int) 220 => 'Placenta',
(int) 221 => 'Testis',
(int) 222 => 'Kidney',
(int) 223 => 'Adipose',
(int) 224 => 'Breast',
(int) 225 => 'Colon',
(int) 226 => 'Heart',
(int) 227 => 'Testis',
(int) 228 => 'Breast'
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000025437' => array(
[maximum depth reached]
),
'ENSMUSG00000028034' => array(
[maximum depth reached]
),
'ENSMUSG00000039068' => array(
[maximum depth reached]
),
'ENSMUSG00000039103' => array(
[maximum depth reached]
),
'ENSMUSG00000054942' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Bladder',
(int) 88 => 'Brain',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Testis',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000036549' => 'zinc finger, ZZ-type containing 3',
'ENSG00000077254' => 'ubiquitin specific peptidase 33',
'ENSG00000162613' => 'far upstream element (FUSE) binding protein 1',
'ENSG00000162614' => 'nexilin (F actin binding protein)',
'ENSG00000180488' => 'family with sequence similarity 73, member A',
'ENSG00000219201' => null,
'ENSG00000222849' => 'RNA, 5S ribosomal pseudogene 21',
'ENSG00000232015' => 'heat shock 10kDa protein 1 pseudogene 25',
'ENSG00000232672' => null,
'ENSG00000235613' => 'nuclear speckle splicing regulatory protein 1 pseudogene 1',
'ENSG00000235927' => 'NEXN antisense RNA 1',
'ENSG00000243437' => 'RNA, 7SL, cytoplasmic 370, pseudogene',
'ENSG00000251785' => 'RNA, 5S ribosomal pseudogene 20',
'ENSMUSG00000025437' => 'ubiquitin specific peptidase 33',
'ENSMUSG00000028034' => 'far upstream element (FUSE) binding protein 1',
'ENSMUSG00000039068' => 'zinc finger, ZZ domain containing 3',
'ENSMUSG00000039103' => 'nexilin',
'ENSMUSG00000054942' => 'family with sequence similarity 73, member A'
)
$gene_name_arr = array(
'ENSG00000036549' => 'ZZZ3',
'ENSG00000077254' => 'USP33',
'ENSG00000162613' => 'FUBP1',
'ENSG00000162614' => 'NEXN',
'ENSG00000180488' => 'FAM73A',
'ENSG00000219201' => 'RP11-181C21.4',
'ENSG00000222849' => 'RNA5SP21',
'ENSG00000232015' => 'HSPE1P25',
'ENSG00000232672' => 'RP4-706L14.2',
'ENSG00000235613' => 'NSRP1P1',
'ENSG00000235927' => 'NEXN-AS1',
'ENSG00000243437' => 'RN7SL370P',
'ENSG00000251785' => 'RNA5SP20',
'ENSMUSG00000025437' => 'Usp33',
'ENSMUSG00000028034' => 'Fubp1',
'ENSMUSG00000039068' => 'Zzz3',
'ENSMUSG00000039103' => 'Nexn',
'ENSMUSG00000054942' => 'Fam73a'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '77564480',
'seq_end' => '77948632',
'region_length' => '384152',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '152232542',
'seq_end' => '152459476',
'region_length' => '226934',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '8446734',
'seq_end' => '8446897',
'region_length' => '163',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 64 => 'Brain',
(int) 91 => 'Breast',
(int) 120 => 'Colon',
(int) 146 => 'Heart',
(int) 176 => 'Kidney',
(int) 203 => 'Liver',
(int) 233 => 'Lung',
(int) 255 => 'Muscle',
(int) 278 => 'Ovary',
(int) 309 => 'Placenta',
(int) 335 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 82
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000370798' => array(
'start' => '77564888',
'end' => '77683419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-002'
),
'ENST00000370801' => array(
'start' => '77564500',
'end' => '77682658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-001'
),
'ENST00000414381' => array(
'start' => '77633246',
'end' => '77683374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-009'
),
'ENST00000433749' => array(
'start' => '77633182',
'end' => '77682675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-010'
),
'ENST00000458763' => array(
'start' => '77676982',
'end' => '77682675',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-008'
),
'ENST00000463166' => array(
'start' => '77633312',
'end' => '77683403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-006'
),
'ENST00000469944' => array(
'start' => '77640954',
'end' => '77682643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-007'
),
'ENST00000474746' => array(
'start' => '77581818',
'end' => '77585059',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-011'
),
'ENST00000476195' => array(
'start' => '77581018',
'end' => '77585043',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-005'
),
'ENST00000476275' => array(
'start' => '77564506',
'end' => '77632876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-003'
),
'ENST00000481346' => array(
'start' => '77562416',
'end' => '77631921',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-004'
),
'ENST00000357428' => array(
'start' => '77695991',
'end' => '77745462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-201'
),
'ENST00000370792' => array(
'start' => '77711652',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-003'
),
'ENST00000370793' => array(
'start' => '77695991',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-002'
),
'ENST00000370794' => array(
'start' => '77695987',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-001'
),
'ENST00000461986' => array(
'start' => '77717645',
'end' => '77722399',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-006'
),
'ENST00000462192' => array(
'start' => '77718024',
'end' => '77721738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-007'
),
'ENST00000472462' => array(
'start' => '77711785',
'end' => '77714917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-008'
),
'ENST00000477949' => array(
'start' => '77711502',
'end' => '77713508',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-009'
),
'ENST00000481579' => array(
'start' => '77695991',
'end' => '77728336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-004'
),
'ENST00000498328' => array(
'start' => '77717540',
'end' => '77718712',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-005'
),
'ENST00000524536' => array(
'start' => '77734357',
'end' => '77759689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-010'
),
'ENST00000524778' => array(
'start' => '77739398',
'end' => '77759820',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-012'
),
'ENST00000525113' => array(
'start' => '77739311',
'end' => '77759846',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-011'
),
'ENST00000527390' => array(
'start' => '77711665',
'end' => '77721205',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP33-016'
),
'ENST00000528150' => array(
'start' => '77739331',
'end' => '77759811',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-014'
),
'ENST00000530709' => array(
'start' => '77739377',
'end' => '77759388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-013'
),
'ENST00000531637' => array(
'start' => '77717778',
'end' => '77721239',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-015'
),
'ENST00000533928' => array(
'start' => '77697609',
'end' => '77701651',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-017'
),
'ENST00000294623' => array(
'start' => '77946482',
'end' => '77979087',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FUBP1-001'
),
'ENST00000370767' => array(
'start' => '77948405',
'end' => '77979092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-003'
),
'ENST00000370768' => array(
'start' => '77948405',
'end' => '77979086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-002'
),
'ENST00000421641' => array(
'start' => '77965069',
'end' => '77979110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-004'
),
'ENST00000470287' => array(
'start' => '77955255',
'end' => '77960785',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-013'
),
'ENST00000474632' => array(
'start' => '77944055',
'end' => '77947692',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-006'
),
'ENST00000480673' => array(
'start' => '77944055',
'end' => '77946576',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-009'
),
'ENST00000483894' => array(
'start' => '77944055',
'end' => '77945895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-010'
),
'ENST00000487684' => array(
'start' => '77948970',
'end' => '77955458',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-012'
),
'ENST00000488814' => array(
'start' => '77944055',
'end' => '77949267',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-005'
),
'ENST00000489495' => array(
'start' => '77944055',
'end' => '77948333',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-011'
),
'ENST00000492405' => array(
'start' => '77944055',
'end' => '77955282',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-007'
),
'ENST00000492724' => array(
'start' => '77944055',
'end' => '77955339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-008'
),
'ENST00000330010' => array(
'start' => '77888515',
'end' => '77943891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-201'
),
'ENST00000334785' => array(
'start' => '77888628',
'end' => '77943224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-001'
),
'ENST00000342754' => array(
'start' => '77918128',
'end' => '77943895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-005'
),
'ENST00000401035' => array(
'start' => '77888513',
'end' => '77933384',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-002'
),
'ENST00000440324' => array(
'start' => '77888662',
'end' => '77935919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-003'
),
'ENST00000464998' => array(
'start' => '77926569',
'end' => '77935970',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-007'
),
'ENST00000470735' => array(
'start' => '77941711',
'end' => '77942753',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-006'
),
'ENST00000480732' => array(
'start' => '77931662',
'end' => '77943199',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NEXN-004'
),
'ENST00000370791' => array(
'start' => '77779624',
'end' => '77878421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-001'
),
'ENST00000443751' => array(
'start' => '77779624',
'end' => '77879539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-201'
),
'ENST00000476203' => array(
'start' => '77803389',
'end' => '77862215',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FAM73A-002'
),
'ENST00000477627' => array(
'start' => '77779908',
'end' => '77801431',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-003'
),
'ENST00000427577' => array(
'start' => '77810861',
'end' => '77811781',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-181C21.4-001'
),
'ENST00000410917' => array(
'start' => '77779904',
'end' => '77779999',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP21-201'
),
'ENST00000455484' => array(
'start' => '77853355',
'end' => '77853893',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HSPE1P25-001'
),
'ENST00000431536' => array(
'start' => '77773865',
'end' => '77774864',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-706L14.2-001'
),
'ENST00000444067' => array(
'start' => '77847110',
'end' => '77848802',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NSRP1P1-001'
),
'ENST00000421331' => array(
'start' => '77881348',
'end' => '77889539',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-001'
),
'ENST00000597757' => array(
'start' => '77881359',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-002'
),
'ENST00000619246' => array(
'start' => '77882743',
'end' => '77886123',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-003'
),
'ENST00000620892' => array(
'start' => '77882757',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-004'
),
'ENST00000470869' => array(
'start' => '77645324',
'end' => '77645618',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL370P-201'
),
'ENST00000515976' => array(
'start' => '77614869',
'end' => '77614952',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP20-201'
),
'ENSMUST00000026507' => array(
'start' => '152346478',
'end' => '152393612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-001'
),
'ENSMUST00000117492' => array(
'start' => '152346489',
'end' => '152393330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-002'
),
'ENSMUST00000123237' => array(
'start' => '152346512',
'end' => '152371905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Usp33-003'
),
'ENSMUST00000138575' => array(
'start' => '152361898',
'end' => '152368491',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp33-005'
),
'ENSMUST00000142969' => array(
'start' => '152346515',
'end' => '152358348',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp33-004'
),
'ENSMUST00000106121' => array(
'start' => '152210521',
'end' => '152236826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-201'
),
'ENSMUST00000166984' => array(
'start' => '152210458',
'end' => '152236830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-202'
),
'ENSMUST00000089982' => array(
'start' => '152396684',
'end' => '152459477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-002'
),
'ENSMUST00000106100' => array(
'start' => '152396003',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-001'
),
'ENSMUST00000106101' => array(
'start' => '152396694',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-201'
),
'ENSMUST00000106103' => array(
'start' => '152395473',
'end' => '152459474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-003'
),
'ENSMUST00000135044' => array(
'start' => '152457417',
'end' => '152458535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-005'
),
'ENSMUST00000138115' => array(
'start' => '152395525',
'end' => '152427620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-004'
),
'ENSMUST00000150802' => array(
'start' => '152396032',
'end' => '152449128',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-006'
),
'ENSMUST00000046045' => array(
'start' => '152236986',
'end' => '152266320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nexn-201'
),
'ENSMUST00000068243' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-201'
),
'ENSMUST00000073089' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-202'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
'ENSG00000036549' => array(
[maximum depth reached]
),
'ENSG00000077254' => array(
[maximum depth reached]
),
'ENSG00000162613' => array(
[maximum depth reached]
),
'ENSG00000162614' => array(
[maximum depth reached]
),
'ENSG00000180488' => array(
[maximum depth reached]
),
'ENSG00000219201' => array(
[maximum depth reached]
),
'ENSG00000232015' => array(
[maximum depth reached]
),
'ENSG00000232672' => array(
[maximum depth reached]
),
'ENSG00000235613' => array(
[maximum depth reached]
),
'ENSG00000235927' => array(
[maximum depth reached]
),
'ENSG00000243437' => array(
[maximum depth reached]
),
'ENSG00000251785' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Liver',
(int) 2 => 'Ovary',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 7 => 'Breast',
(int) 8 => 'Colon',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Kidney',
(int) 76 => 'Adipose',
(int) 77 => 'Bladder',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Liver',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Liver',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Brain',
(int) 146 => 'Brain',
(int) 147 => 'Colon',
(int) 148 => 'Heart',
(int) 149 => 'Kidney',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Ovary',
(int) 156 => 'Adipose',
(int) 157 => 'Bladder',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis',
(int) 169 => 'Adipose',
(int) 170 => 'Adrenal',
(int) 171 => 'Bladder',
(int) 172 => 'Brain',
(int) 173 => 'Breast',
(int) 174 => 'Heart',
(int) 175 => 'Kidney',
(int) 176 => 'Ovary',
(int) 177 => 'Placenta',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Heart',
(int) 181 => 'Ovary',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Brain',
(int) 186 => 'Breast',
(int) 187 => 'Colon',
(int) 188 => 'Heart',
(int) 189 => 'Kidney',
(int) 190 => 'Liver',
(int) 191 => 'Lung',
(int) 192 => 'Muscle',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Brain',
(int) 198 => 'Breast',
(int) 199 => 'Colon',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Breast',
(int) 213 => 'Colon',
(int) 214 => 'Heart',
(int) 215 => 'Kidney',
(int) 216 => 'Liver',
(int) 217 => 'Lung',
(int) 218 => 'Muscle',
(int) 219 => 'Ovary',
(int) 220 => 'Placenta',
(int) 221 => 'Testis',
(int) 222 => 'Kidney',
(int) 223 => 'Adipose',
(int) 224 => 'Breast',
(int) 225 => 'Colon',
(int) 226 => 'Heart',
(int) 227 => 'Testis',
(int) 228 => 'Breast'
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000025437' => array(
[maximum depth reached]
),
'ENSMUSG00000028034' => array(
[maximum depth reached]
),
'ENSMUSG00000039068' => array(
[maximum depth reached]
),
'ENSMUSG00000039103' => array(
[maximum depth reached]
),
'ENSMUSG00000054942' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Bladder',
(int) 88 => 'Brain',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Testis',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '8446734',
'seq_end' => '8446897',
'region_length' => '163',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
)
$gene_el = array(
'ENSMUST00000068243' => array(
'Adipose' => array(
'average_FPKM' => '0.324',
'stddev_FPKM' => '0.22'
),
'Adrenal' => array(
'average_FPKM' => '4.734',
'stddev_FPKM' => '1.24'
),
'Brain' => array(
'average_FPKM' => '1.195',
'stddev_FPKM' => '0.28'
),
'Breast' => array(
'average_FPKM' => '2.119',
'stddev_FPKM' => '0.32'
),
'Colon' => array(
'average_FPKM' => '2.370',
'stddev_FPKM' => '0.87'
),
'Heart' => array(
'average_FPKM' => '1.152',
'stddev_FPKM' => '0.21'
),
'Kidney' => array(
'average_FPKM' => '2.475',
'stddev_FPKM' => '0.32'
),
'Liver' => array(
'average_FPKM' => '0.359',
'stddev_FPKM' => '0.19'
),
'Lung' => array(
'average_FPKM' => '2.567',
'stddev_FPKM' => '0.63'
),
'Ovary' => array(
'average_FPKM' => '4.261',
'stddev_FPKM' => '1.22'
),
'Placenta' => array(
'average_FPKM' => '1.065',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.798',
'stddev_FPKM' => '0.10'
)
),
'ENSMUST00000073089' => array(
'Adipose' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.86'
),
'Bladder' => array(
'average_FPKM' => '1.599',
'stddev_FPKM' => '0.13'
),
'Brain' => array(
'average_FPKM' => '6.849',
'stddev_FPKM' => '4.44'
),
'Breast' => array(
'average_FPKM' => '0.940',
'stddev_FPKM' => '0.38'
),
'Colon' => array(
'average_FPKM' => '1.091',
'stddev_FPKM' => '0.36'
),
'Heart' => array(
'average_FPKM' => '1.638',
'stddev_FPKM' => '0.60'
),
'Kidney' => array(
'average_FPKM' => '3.274',
'stddev_FPKM' => '0.47'
),
'Liver' => array(
'average_FPKM' => '1.628',
'stddev_FPKM' => '1.37'
),
'Lung' => array(
'average_FPKM' => '3.233',
'stddev_FPKM' => '0.58'
),
'Muscle' => array(
'average_FPKM' => '1.157',
'stddev_FPKM' => '0.38'
),
'Ovary' => array(
'average_FPKM' => '2.655',
'stddev_FPKM' => '0.73'
),
'Placenta' => array(
'average_FPKM' => '4.166',
'stddev_FPKM' => '0.97'
),
'Testis' => array(
'average_FPKM' => '0.617',
'stddev_FPKM' => '0.24'
)
)
)
$gene_key = 'ENSMUSG00000054942'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.86'
),
'Bladder' => array(
'average_FPKM' => '1.599',
'stddev_FPKM' => '0.13'
),
'Brain' => array(
'average_FPKM' => '6.849',
'stddev_FPKM' => '4.44'
),
'Breast' => array(
'average_FPKM' => '0.940',
'stddev_FPKM' => '0.38'
),
'Colon' => array(
'average_FPKM' => '1.091',
'stddev_FPKM' => '0.36'
),
'Heart' => array(
'average_FPKM' => '1.638',
'stddev_FPKM' => '0.60'
),
'Kidney' => array(
'average_FPKM' => '3.274',
'stddev_FPKM' => '0.47'
),
'Liver' => array(
'average_FPKM' => '1.628',
'stddev_FPKM' => '1.37'
),
'Lung' => array(
'average_FPKM' => '3.233',
'stddev_FPKM' => '0.58'
),
'Muscle' => array(
'average_FPKM' => '1.157',
'stddev_FPKM' => '0.38'
),
'Ovary' => array(
'average_FPKM' => '2.655',
'stddev_FPKM' => '0.73'
),
'Placenta' => array(
'average_FPKM' => '4.166',
'stddev_FPKM' => '0.97'
),
'Testis' => array(
'average_FPKM' => '0.617',
'stddev_FPKM' => '0.24'
)
)
$tran_key = 'ENSMUST00000073089'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000036549' => 'zinc finger, ZZ-type containing 3',
'ENSG00000077254' => 'ubiquitin specific peptidase 33',
'ENSG00000162613' => 'far upstream element (FUSE) binding protein 1',
'ENSG00000162614' => 'nexilin (F actin binding protein)',
'ENSG00000180488' => 'family with sequence similarity 73, member A',
'ENSG00000219201' => null,
'ENSG00000222849' => 'RNA, 5S ribosomal pseudogene 21',
'ENSG00000232015' => 'heat shock 10kDa protein 1 pseudogene 25',
'ENSG00000232672' => null,
'ENSG00000235613' => 'nuclear speckle splicing regulatory protein 1 pseudogene 1',
'ENSG00000235927' => 'NEXN antisense RNA 1',
'ENSG00000243437' => 'RNA, 7SL, cytoplasmic 370, pseudogene',
'ENSG00000251785' => 'RNA, 5S ribosomal pseudogene 20',
'ENSMUSG00000025437' => 'ubiquitin specific peptidase 33',
'ENSMUSG00000028034' => 'far upstream element (FUSE) binding protein 1',
'ENSMUSG00000039068' => 'zinc finger, ZZ domain containing 3',
'ENSMUSG00000039103' => 'nexilin',
'ENSMUSG00000054942' => 'family with sequence similarity 73, member A'
),
'gene_name_arr' => array(
'ENSG00000036549' => 'ZZZ3',
'ENSG00000077254' => 'USP33',
'ENSG00000162613' => 'FUBP1',
'ENSG00000162614' => 'NEXN',
'ENSG00000180488' => 'FAM73A',
'ENSG00000219201' => 'RP11-181C21.4',
'ENSG00000222849' => 'RNA5SP21',
'ENSG00000232015' => 'HSPE1P25',
'ENSG00000232672' => 'RP4-706L14.2',
'ENSG00000235613' => 'NSRP1P1',
'ENSG00000235927' => 'NEXN-AS1',
'ENSG00000243437' => 'RN7SL370P',
'ENSG00000251785' => 'RNA5SP20',
'ENSMUSG00000025437' => 'Usp33',
'ENSMUSG00000028034' => 'Fubp1',
'ENSMUSG00000039068' => 'Zzz3',
'ENSMUSG00000039103' => 'Nexn',
'ENSMUSG00000054942' => 'Fam73a'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 64 => 'Brain',
(int) 91 => 'Breast',
(int) 120 => 'Colon',
(int) 146 => 'Heart',
(int) 176 => 'Kidney',
(int) 203 => 'Liver',
(int) 233 => 'Lung',
(int) 255 => 'Muscle',
(int) 278 => 'Ovary',
(int) 309 => 'Placenta',
(int) 335 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 82,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000370798' => array(
'start' => '77564888',
'end' => '77683419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-002'
),
'ENST00000370801' => array(
'start' => '77564500',
'end' => '77682658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-001'
),
'ENST00000414381' => array(
'start' => '77633246',
'end' => '77683374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-009'
),
'ENST00000433749' => array(
'start' => '77633182',
'end' => '77682675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-010'
),
'ENST00000458763' => array(
'start' => '77676982',
'end' => '77682675',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-008'
),
'ENST00000463166' => array(
'start' => '77633312',
'end' => '77683403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-006'
),
'ENST00000469944' => array(
'start' => '77640954',
'end' => '77682643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-007'
),
'ENST00000474746' => array(
'start' => '77581818',
'end' => '77585059',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-011'
),
'ENST00000476195' => array(
'start' => '77581018',
'end' => '77585043',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-005'
),
'ENST00000476275' => array(
'start' => '77564506',
'end' => '77632876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-003'
),
'ENST00000481346' => array(
'start' => '77562416',
'end' => '77631921',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-004'
),
'ENST00000357428' => array(
'start' => '77695991',
'end' => '77745462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-201'
),
'ENST00000370792' => array(
'start' => '77711652',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-003'
),
'ENST00000370793' => array(
'start' => '77695991',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-002'
),
'ENST00000370794' => array(
'start' => '77695987',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-001'
),
'ENST00000461986' => array(
'start' => '77717645',
'end' => '77722399',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-006'
),
'ENST00000462192' => array(
'start' => '77718024',
'end' => '77721738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-007'
),
'ENST00000472462' => array(
'start' => '77711785',
'end' => '77714917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-008'
),
'ENST00000477949' => array(
'start' => '77711502',
'end' => '77713508',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-009'
),
'ENST00000481579' => array(
'start' => '77695991',
'end' => '77728336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-004'
),
'ENST00000498328' => array(
'start' => '77717540',
'end' => '77718712',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-005'
),
'ENST00000524536' => array(
'start' => '77734357',
'end' => '77759689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-010'
),
'ENST00000524778' => array(
'start' => '77739398',
'end' => '77759820',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-012'
),
'ENST00000525113' => array(
'start' => '77739311',
'end' => '77759846',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-011'
),
'ENST00000527390' => array(
'start' => '77711665',
'end' => '77721205',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP33-016'
),
'ENST00000528150' => array(
'start' => '77739331',
'end' => '77759811',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-014'
),
'ENST00000530709' => array(
'start' => '77739377',
'end' => '77759388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-013'
),
'ENST00000531637' => array(
'start' => '77717778',
'end' => '77721239',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-015'
),
'ENST00000533928' => array(
'start' => '77697609',
'end' => '77701651',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-017'
),
'ENST00000294623' => array(
'start' => '77946482',
'end' => '77979087',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FUBP1-001'
),
'ENST00000370767' => array(
'start' => '77948405',
'end' => '77979092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-003'
),
'ENST00000370768' => array(
'start' => '77948405',
'end' => '77979086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-002'
),
'ENST00000421641' => array(
'start' => '77965069',
'end' => '77979110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-004'
),
'ENST00000470287' => array(
'start' => '77955255',
'end' => '77960785',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-013'
),
'ENST00000474632' => array(
'start' => '77944055',
'end' => '77947692',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-006'
),
'ENST00000480673' => array(
'start' => '77944055',
'end' => '77946576',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-009'
),
'ENST00000483894' => array(
'start' => '77944055',
'end' => '77945895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-010'
),
'ENST00000487684' => array(
'start' => '77948970',
'end' => '77955458',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-012'
),
'ENST00000488814' => array(
'start' => '77944055',
'end' => '77949267',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-005'
),
'ENST00000489495' => array(
'start' => '77944055',
'end' => '77948333',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-011'
),
'ENST00000492405' => array(
'start' => '77944055',
'end' => '77955282',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-007'
),
'ENST00000492724' => array(
'start' => '77944055',
'end' => '77955339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-008'
),
'ENST00000330010' => array(
'start' => '77888515',
'end' => '77943891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-201'
),
'ENST00000334785' => array(
'start' => '77888628',
'end' => '77943224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-001'
),
'ENST00000342754' => array(
'start' => '77918128',
'end' => '77943895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-005'
),
'ENST00000401035' => array(
'start' => '77888513',
'end' => '77933384',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-002'
),
'ENST00000440324' => array(
'start' => '77888662',
'end' => '77935919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-003'
),
'ENST00000464998' => array(
'start' => '77926569',
'end' => '77935970',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-007'
),
'ENST00000470735' => array(
'start' => '77941711',
'end' => '77942753',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-006'
),
'ENST00000480732' => array(
'start' => '77931662',
'end' => '77943199',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NEXN-004'
),
'ENST00000370791' => array(
'start' => '77779624',
'end' => '77878421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-001'
),
'ENST00000443751' => array(
'start' => '77779624',
'end' => '77879539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-201'
),
'ENST00000476203' => array(
'start' => '77803389',
'end' => '77862215',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FAM73A-002'
),
'ENST00000477627' => array(
'start' => '77779908',
'end' => '77801431',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-003'
),
'ENST00000427577' => array(
'start' => '77810861',
'end' => '77811781',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-181C21.4-001'
),
'ENST00000410917' => array(
'start' => '77779904',
'end' => '77779999',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP21-201'
),
'ENST00000455484' => array(
'start' => '77853355',
'end' => '77853893',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HSPE1P25-001'
),
'ENST00000431536' => array(
'start' => '77773865',
'end' => '77774864',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-706L14.2-001'
),
'ENST00000444067' => array(
'start' => '77847110',
'end' => '77848802',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NSRP1P1-001'
),
'ENST00000421331' => array(
'start' => '77881348',
'end' => '77889539',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-001'
),
'ENST00000597757' => array(
'start' => '77881359',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-002'
),
'ENST00000619246' => array(
'start' => '77882743',
'end' => '77886123',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-003'
),
'ENST00000620892' => array(
'start' => '77882757',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-004'
),
'ENST00000470869' => array(
'start' => '77645324',
'end' => '77645618',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL370P-201'
),
'ENST00000515976' => array(
'start' => '77614869',
'end' => '77614952',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP20-201'
),
'ENSMUST00000026507' => array(
'start' => '152346478',
'end' => '152393612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-001'
),
'ENSMUST00000117492' => array(
'start' => '152346489',
'end' => '152393330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-002'
),
'ENSMUST00000123237' => array(
'start' => '152346512',
'end' => '152371905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Usp33-003'
),
'ENSMUST00000138575' => array(
'start' => '152361898',
'end' => '152368491',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp33-005'
),
'ENSMUST00000142969' => array(
'start' => '152346515',
'end' => '152358348',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp33-004'
),
'ENSMUST00000106121' => array(
'start' => '152210521',
'end' => '152236826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-201'
),
'ENSMUST00000166984' => array(
'start' => '152210458',
'end' => '152236830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-202'
),
'ENSMUST00000089982' => array(
'start' => '152396684',
'end' => '152459477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-002'
),
'ENSMUST00000106100' => array(
'start' => '152396003',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-001'
),
'ENSMUST00000106101' => array(
'start' => '152396694',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-201'
),
'ENSMUST00000106103' => array(
'start' => '152395473',
'end' => '152459474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-003'
),
'ENSMUST00000135044' => array(
'start' => '152457417',
'end' => '152458535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-005'
),
'ENSMUST00000138115' => array(
'start' => '152395525',
'end' => '152427620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-004'
),
'ENSMUST00000150802' => array(
'start' => '152396032',
'end' => '152449128',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-006'
),
'ENSMUST00000046045' => array(
'start' => '152236986',
'end' => '152266320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nexn-201'
),
'ENSMUST00000068243' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-201'
),
'ENSMUST00000073089' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-202'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
'ENSG00000036549' => array(
[maximum depth reached]
),
'ENSG00000077254' => array(
[maximum depth reached]
),
'ENSG00000162613' => array(
[maximum depth reached]
),
'ENSG00000162614' => array(
[maximum depth reached]
),
'ENSG00000180488' => array(
[maximum depth reached]
),
'ENSG00000219201' => array(
[maximum depth reached]
),
'ENSG00000232015' => array(
[maximum depth reached]
),
'ENSG00000232672' => array(
[maximum depth reached]
),
'ENSG00000235613' => array(
[maximum depth reached]
),
'ENSG00000235927' => array(
[maximum depth reached]
),
'ENSG00000243437' => array(
[maximum depth reached]
),
'ENSG00000251785' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Liver',
(int) 2 => 'Ovary',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 7 => 'Breast',
(int) 8 => 'Colon',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Kidney',
(int) 76 => 'Adipose',
(int) 77 => 'Bladder',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Liver',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Liver',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Brain',
(int) 146 => 'Brain',
(int) 147 => 'Colon',
(int) 148 => 'Heart',
(int) 149 => 'Kidney',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Ovary',
(int) 156 => 'Adipose',
(int) 157 => 'Bladder',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis',
(int) 169 => 'Adipose',
(int) 170 => 'Adrenal',
(int) 171 => 'Bladder',
(int) 172 => 'Brain',
(int) 173 => 'Breast',
(int) 174 => 'Heart',
(int) 175 => 'Kidney',
(int) 176 => 'Ovary',
(int) 177 => 'Placenta',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Heart',
(int) 181 => 'Ovary',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Brain',
(int) 186 => 'Breast',
(int) 187 => 'Colon',
(int) 188 => 'Heart',
(int) 189 => 'Kidney',
(int) 190 => 'Liver',
(int) 191 => 'Lung',
(int) 192 => 'Muscle',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Brain',
(int) 198 => 'Breast',
(int) 199 => 'Colon',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Breast',
(int) 213 => 'Colon',
(int) 214 => 'Heart',
(int) 215 => 'Kidney',
(int) 216 => 'Liver',
(int) 217 => 'Lung',
(int) 218 => 'Muscle',
(int) 219 => 'Ovary',
(int) 220 => 'Placenta',
(int) 221 => 'Testis',
(int) 222 => 'Kidney',
(int) 223 => 'Adipose',
(int) 224 => 'Breast',
(int) 225 => 'Colon',
(int) 226 => 'Heart',
(int) 227 => 'Testis',
(int) 228 => 'Breast'
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000025437' => array(
[maximum depth reached]
),
'ENSMUSG00000028034' => array(
[maximum depth reached]
),
'ENSMUSG00000039068' => array(
[maximum depth reached]
),
'ENSMUSG00000039103' => array(
[maximum depth reached]
),
'ENSMUSG00000054942' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Bladder',
(int) 88 => 'Brain',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Testis',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000036549' => 'zinc finger, ZZ-type containing 3',
'ENSG00000077254' => 'ubiquitin specific peptidase 33',
'ENSG00000162613' => 'far upstream element (FUSE) binding protein 1',
'ENSG00000162614' => 'nexilin (F actin binding protein)',
'ENSG00000180488' => 'family with sequence similarity 73, member A',
'ENSG00000219201' => null,
'ENSG00000222849' => 'RNA, 5S ribosomal pseudogene 21',
'ENSG00000232015' => 'heat shock 10kDa protein 1 pseudogene 25',
'ENSG00000232672' => null,
'ENSG00000235613' => 'nuclear speckle splicing regulatory protein 1 pseudogene 1',
'ENSG00000235927' => 'NEXN antisense RNA 1',
'ENSG00000243437' => 'RNA, 7SL, cytoplasmic 370, pseudogene',
'ENSG00000251785' => 'RNA, 5S ribosomal pseudogene 20',
'ENSMUSG00000025437' => 'ubiquitin specific peptidase 33',
'ENSMUSG00000028034' => 'far upstream element (FUSE) binding protein 1',
'ENSMUSG00000039068' => 'zinc finger, ZZ domain containing 3',
'ENSMUSG00000039103' => 'nexilin',
'ENSMUSG00000054942' => 'family with sequence similarity 73, member A'
)
$gene_name_arr = array(
'ENSG00000036549' => 'ZZZ3',
'ENSG00000077254' => 'USP33',
'ENSG00000162613' => 'FUBP1',
'ENSG00000162614' => 'NEXN',
'ENSG00000180488' => 'FAM73A',
'ENSG00000219201' => 'RP11-181C21.4',
'ENSG00000222849' => 'RNA5SP21',
'ENSG00000232015' => 'HSPE1P25',
'ENSG00000232672' => 'RP4-706L14.2',
'ENSG00000235613' => 'NSRP1P1',
'ENSG00000235927' => 'NEXN-AS1',
'ENSG00000243437' => 'RN7SL370P',
'ENSG00000251785' => 'RNA5SP20',
'ENSMUSG00000025437' => 'Usp33',
'ENSMUSG00000028034' => 'Fubp1',
'ENSMUSG00000039068' => 'Zzz3',
'ENSMUSG00000039103' => 'Nexn',
'ENSMUSG00000054942' => 'Fam73a'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0001',
'tax_id' => '9606',
'chromosome' => '1',
'seq_start' => '77564480',
'seq_end' => '77948632',
'region_length' => '384152',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '152232542',
'seq_end' => '152459476',
'region_length' => '226934',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '8446734',
'seq_end' => '8446897',
'region_length' => '163',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 28 => 'Adrenal',
(int) 47 => 'Bladder',
(int) 64 => 'Brain',
(int) 91 => 'Breast',
(int) 120 => 'Colon',
(int) 146 => 'Heart',
(int) 176 => 'Kidney',
(int) 203 => 'Liver',
(int) 233 => 'Lung',
(int) 255 => 'Muscle',
(int) 278 => 'Ovary',
(int) 309 => 'Placenta',
(int) 335 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 82
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000370798' => array(
'start' => '77564888',
'end' => '77683419',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-002'
),
'ENST00000370801' => array(
'start' => '77564500',
'end' => '77682658',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-001'
),
'ENST00000414381' => array(
'start' => '77633246',
'end' => '77683374',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-009'
),
'ENST00000433749' => array(
'start' => '77633182',
'end' => '77682675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ZZZ3-010'
),
'ENST00000458763' => array(
'start' => '77676982',
'end' => '77682675',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-008'
),
'ENST00000463166' => array(
'start' => '77633312',
'end' => '77683403',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-006'
),
'ENST00000469944' => array(
'start' => '77640954',
'end' => '77682643',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-007'
),
'ENST00000474746' => array(
'start' => '77581818',
'end' => '77585059',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-011'
),
'ENST00000476195' => array(
'start' => '77581018',
'end' => '77585043',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-005'
),
'ENST00000476275' => array(
'start' => '77564506',
'end' => '77632876',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-003'
),
'ENST00000481346' => array(
'start' => '77562416',
'end' => '77631921',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ZZZ3-004'
),
'ENST00000357428' => array(
'start' => '77695991',
'end' => '77745462',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-201'
),
'ENST00000370792' => array(
'start' => '77711652',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-003'
),
'ENST00000370793' => array(
'start' => '77695991',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-002'
),
'ENST00000370794' => array(
'start' => '77695987',
'end' => '77759852',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-001'
),
'ENST00000461986' => array(
'start' => '77717645',
'end' => '77722399',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-006'
),
'ENST00000462192' => array(
'start' => '77718024',
'end' => '77721738',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-007'
),
'ENST00000472462' => array(
'start' => '77711785',
'end' => '77714917',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-008'
),
'ENST00000477949' => array(
'start' => '77711502',
'end' => '77713508',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-009'
),
'ENST00000481579' => array(
'start' => '77695991',
'end' => '77728336',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-004'
),
'ENST00000498328' => array(
'start' => '77717540',
'end' => '77718712',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-005'
),
'ENST00000524536' => array(
'start' => '77734357',
'end' => '77759689',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-010'
),
'ENST00000524778' => array(
'start' => '77739398',
'end' => '77759820',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-012'
),
'ENST00000525113' => array(
'start' => '77739311',
'end' => '77759846',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-011'
),
'ENST00000527390' => array(
'start' => '77711665',
'end' => '77721205',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'USP33-016'
),
'ENST00000528150' => array(
'start' => '77739331',
'end' => '77759811',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'USP33-014'
),
'ENST00000530709' => array(
'start' => '77739377',
'end' => '77759388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'USP33-013'
),
'ENST00000531637' => array(
'start' => '77717778',
'end' => '77721239',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-015'
),
'ENST00000533928' => array(
'start' => '77697609',
'end' => '77701651',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'USP33-017'
),
'ENST00000294623' => array(
'start' => '77946482',
'end' => '77979087',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'FUBP1-001'
),
'ENST00000370767' => array(
'start' => '77948405',
'end' => '77979092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-003'
),
'ENST00000370768' => array(
'start' => '77948405',
'end' => '77979086',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-002'
),
'ENST00000421641' => array(
'start' => '77965069',
'end' => '77979110',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FUBP1-004'
),
'ENST00000470287' => array(
'start' => '77955255',
'end' => '77960785',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-013'
),
'ENST00000474632' => array(
'start' => '77944055',
'end' => '77947692',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-006'
),
'ENST00000480673' => array(
'start' => '77944055',
'end' => '77946576',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-009'
),
'ENST00000483894' => array(
'start' => '77944055',
'end' => '77945895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-010'
),
'ENST00000487684' => array(
'start' => '77948970',
'end' => '77955458',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-012'
),
'ENST00000488814' => array(
'start' => '77944055',
'end' => '77949267',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-005'
),
'ENST00000489495' => array(
'start' => '77944055',
'end' => '77948333',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-011'
),
'ENST00000492405' => array(
'start' => '77944055',
'end' => '77955282',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-007'
),
'ENST00000492724' => array(
'start' => '77944055',
'end' => '77955339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'FUBP1-008'
),
'ENST00000330010' => array(
'start' => '77888515',
'end' => '77943891',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-201'
),
'ENST00000334785' => array(
'start' => '77888628',
'end' => '77943224',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-001'
),
'ENST00000342754' => array(
'start' => '77918128',
'end' => '77943895',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-005'
),
'ENST00000401035' => array(
'start' => '77888513',
'end' => '77933384',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-002'
),
'ENST00000440324' => array(
'start' => '77888662',
'end' => '77935919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'NEXN-003'
),
'ENST00000464998' => array(
'start' => '77926569',
'end' => '77935970',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-007'
),
'ENST00000470735' => array(
'start' => '77941711',
'end' => '77942753',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'NEXN-006'
),
'ENST00000480732' => array(
'start' => '77931662',
'end' => '77943199',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'NEXN-004'
),
'ENST00000370791' => array(
'start' => '77779624',
'end' => '77878421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-001'
),
'ENST00000443751' => array(
'start' => '77779624',
'end' => '77879539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-201'
),
'ENST00000476203' => array(
'start' => '77803389',
'end' => '77862215',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'FAM73A-002'
),
'ENST00000477627' => array(
'start' => '77779908',
'end' => '77801431',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FAM73A-003'
),
'ENST00000427577' => array(
'start' => '77810861',
'end' => '77811781',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-181C21.4-001'
),
'ENST00000410917' => array(
'start' => '77779904',
'end' => '77779999',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP21-201'
),
'ENST00000455484' => array(
'start' => '77853355',
'end' => '77853893',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HSPE1P25-001'
),
'ENST00000431536' => array(
'start' => '77773865',
'end' => '77774864',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP4-706L14.2-001'
),
'ENST00000444067' => array(
'start' => '77847110',
'end' => '77848802',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NSRP1P1-001'
),
'ENST00000421331' => array(
'start' => '77881348',
'end' => '77889539',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-001'
),
'ENST00000597757' => array(
'start' => '77881359',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-002'
),
'ENST00000619246' => array(
'start' => '77882743',
'end' => '77886123',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-003'
),
'ENST00000620892' => array(
'start' => '77882757',
'end' => '77887689',
'transcript_biotype' => 'antisense',
'transcript_name' => 'NEXN-AS1-004'
),
'ENST00000470869' => array(
'start' => '77645324',
'end' => '77645618',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL370P-201'
),
'ENST00000515976' => array(
'start' => '77614869',
'end' => '77614952',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP20-201'
),
'ENSMUST00000026507' => array(
'start' => '152346478',
'end' => '152393612',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-001'
),
'ENSMUST00000117492' => array(
'start' => '152346489',
'end' => '152393330',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Usp33-002'
),
'ENSMUST00000123237' => array(
'start' => '152346512',
'end' => '152371905',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Usp33-003'
),
'ENSMUST00000138575' => array(
'start' => '152361898',
'end' => '152368491',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Usp33-005'
),
'ENSMUST00000142969' => array(
'start' => '152346515',
'end' => '152358348',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Usp33-004'
),
'ENSMUST00000106121' => array(
'start' => '152210521',
'end' => '152236826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-201'
),
'ENSMUST00000166984' => array(
'start' => '152210458',
'end' => '152236830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fubp1-202'
),
'ENSMUST00000089982' => array(
'start' => '152396684',
'end' => '152459477',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-002'
),
'ENSMUST00000106100' => array(
'start' => '152396003',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-001'
),
'ENSMUST00000106101' => array(
'start' => '152396694',
'end' => '152462826',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-201'
),
'ENSMUST00000106103' => array(
'start' => '152395473',
'end' => '152459474',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Zzz3-003'
),
'ENSMUST00000135044' => array(
'start' => '152457417',
'end' => '152458535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-005'
),
'ENSMUST00000138115' => array(
'start' => '152395525',
'end' => '152427620',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-004'
),
'ENSMUST00000150802' => array(
'start' => '152396032',
'end' => '152449128',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Zzz3-006'
),
'ENSMUST00000046045' => array(
'start' => '152236986',
'end' => '152266320',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Nexn-201'
),
'ENSMUST00000068243' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-201'
),
'ENSMUST00000073089' => array(
'start' => '152273459',
'end' => '152340407',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fam73a-202'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007KB_0001' => array(
'genes_in_region' => array(
'ENSG00000036549' => array(
[maximum depth reached]
),
'ENSG00000077254' => array(
[maximum depth reached]
),
'ENSG00000162613' => array(
[maximum depth reached]
),
'ENSG00000162614' => array(
[maximum depth reached]
),
'ENSG00000180488' => array(
[maximum depth reached]
),
'ENSG00000219201' => array(
[maximum depth reached]
),
'ENSG00000232015' => array(
[maximum depth reached]
),
'ENSG00000232672' => array(
[maximum depth reached]
),
'ENSG00000235613' => array(
[maximum depth reached]
),
'ENSG00000235927' => array(
[maximum depth reached]
),
'ENSG00000243437' => array(
[maximum depth reached]
),
'ENSG00000251785' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Breast',
(int) 1 => 'Liver',
(int) 2 => 'Ovary',
(int) 3 => 'Adipose',
(int) 4 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 6 => 'Brain',
(int) 7 => 'Breast',
(int) 8 => 'Colon',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Lung',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Placenta',
(int) 16 => 'Testis',
(int) 17 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 19 => 'Breast',
(int) 20 => 'Colon',
(int) 21 => 'Heart',
(int) 22 => 'Kidney',
(int) 23 => 'Liver',
(int) 24 => 'Lung',
(int) 25 => 'Muscle',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Bladder',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Brain',
(int) 40 => 'Colon',
(int) 41 => 'Liver',
(int) 42 => 'Lung',
(int) 43 => 'Muscle',
(int) 44 => 'Placenta',
(int) 45 => 'Testis',
(int) 46 => 'Brain',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Ovary',
(int) 50 => 'Testis',
(int) 51 => 'Adipose',
(int) 52 => 'Brain',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Muscle',
(int) 60 => 'Ovary',
(int) 61 => 'Placenta',
(int) 62 => 'Testis',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Brain',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Testis',
(int) 75 => 'Kidney',
(int) 76 => 'Adipose',
(int) 77 => 'Bladder',
(int) 78 => 'Brain',
(int) 79 => 'Breast',
(int) 80 => 'Colon',
(int) 81 => 'Heart',
(int) 82 => 'Kidney',
(int) 83 => 'Liver',
(int) 84 => 'Lung',
(int) 85 => 'Muscle',
(int) 86 => 'Ovary',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Liver',
(int) 91 => 'Adipose',
(int) 92 => 'Adrenal',
(int) 93 => 'Bladder',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Testis',
(int) 105 => 'Adipose',
(int) 106 => 'Adrenal',
(int) 107 => 'Heart',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Brain',
(int) 112 => 'Breast',
(int) 113 => 'Colon',
(int) 114 => 'Heart',
(int) 115 => 'Kidney',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Breast',
(int) 125 => 'Heart',
(int) 126 => 'Kidney',
(int) 127 => 'Liver',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Kidney',
(int) 138 => 'Liver',
(int) 139 => 'Lung',
(int) 140 => 'Muscle',
(int) 141 => 'Ovary',
(int) 142 => 'Placenta',
(int) 143 => 'Testis',
(int) 144 => 'Bladder',
(int) 145 => 'Brain',
(int) 146 => 'Brain',
(int) 147 => 'Colon',
(int) 148 => 'Heart',
(int) 149 => 'Kidney',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Heart',
(int) 154 => 'Liver',
(int) 155 => 'Ovary',
(int) 156 => 'Adipose',
(int) 157 => 'Bladder',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Colon',
(int) 161 => 'Heart',
(int) 162 => 'Kidney',
(int) 163 => 'Liver',
(int) 164 => 'Lung',
(int) 165 => 'Muscle',
(int) 166 => 'Ovary',
(int) 167 => 'Placenta',
(int) 168 => 'Testis',
(int) 169 => 'Adipose',
(int) 170 => 'Adrenal',
(int) 171 => 'Bladder',
(int) 172 => 'Brain',
(int) 173 => 'Breast',
(int) 174 => 'Heart',
(int) 175 => 'Kidney',
(int) 176 => 'Ovary',
(int) 177 => 'Placenta',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Heart',
(int) 181 => 'Ovary',
(int) 182 => 'Testis',
(int) 183 => 'Adipose',
(int) 184 => 'Adrenal',
(int) 185 => 'Brain',
(int) 186 => 'Breast',
(int) 187 => 'Colon',
(int) 188 => 'Heart',
(int) 189 => 'Kidney',
(int) 190 => 'Liver',
(int) 191 => 'Lung',
(int) 192 => 'Muscle',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Brain',
(int) 198 => 'Breast',
(int) 199 => 'Colon',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Adrenal',
(int) 210 => 'Bladder',
(int) 211 => 'Brain',
(int) 212 => 'Breast',
(int) 213 => 'Colon',
(int) 214 => 'Heart',
(int) 215 => 'Kidney',
(int) 216 => 'Liver',
(int) 217 => 'Lung',
(int) 218 => 'Muscle',
(int) 219 => 'Ovary',
(int) 220 => 'Placenta',
(int) 221 => 'Testis',
(int) 222 => 'Kidney',
(int) 223 => 'Adipose',
(int) 224 => 'Breast',
(int) 225 => 'Colon',
(int) 226 => 'Heart',
(int) 227 => 'Testis',
(int) 228 => 'Breast'
)
),
'CIL_0007KB_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000025437' => array(
[maximum depth reached]
),
'ENSMUSG00000028034' => array(
[maximum depth reached]
),
'ENSMUSG00000039068' => array(
[maximum depth reached]
),
'ENSMUSG00000039103' => array(
[maximum depth reached]
),
'ENSMUSG00000054942' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Muscle',
(int) 24 => 'Ovary',
(int) 25 => 'Placenta',
(int) 26 => 'Testis',
(int) 27 => 'Testis',
(int) 28 => 'Adipose',
(int) 29 => 'Adrenal',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Kidney',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Adipose',
(int) 40 => 'Adrenal',
(int) 41 => 'Bladder',
(int) 42 => 'Brain',
(int) 43 => 'Breast',
(int) 44 => 'Colon',
(int) 45 => 'Heart',
(int) 46 => 'Kidney',
(int) 47 => 'Liver',
(int) 48 => 'Lung',
(int) 49 => 'Muscle',
(int) 50 => 'Ovary',
(int) 51 => 'Placenta',
(int) 52 => 'Testis',
(int) 53 => 'Adipose',
(int) 54 => 'Breast',
(int) 55 => 'Heart',
(int) 56 => 'Liver',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Adrenal',
(int) 63 => 'Bladder',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Heart',
(int) 68 => 'Kidney',
(int) 69 => 'Liver',
(int) 70 => 'Lung',
(int) 71 => 'Muscle',
(int) 72 => 'Ovary',
(int) 73 => 'Placenta',
(int) 74 => 'Testis',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Liver',
(int) 81 => 'Muscle',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adipose',
(int) 86 => 'Adrenal',
(int) 87 => 'Bladder',
(int) 88 => 'Brain',
(int) 89 => 'Breast',
(int) 90 => 'Colon',
(int) 91 => 'Heart',
(int) 92 => 'Kidney',
(int) 93 => 'Liver',
(int) 94 => 'Lung',
(int) 95 => 'Ovary',
(int) 96 => 'Placenta',
(int) 97 => 'Testis',
(int) 98 => 'Testis',
(int) 99 => 'Adipose',
(int) 100 => 'Adrenal',
(int) 101 => 'Bladder',
(int) 102 => 'Brain',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Heart',
(int) 106 => 'Kidney',
(int) 107 => 'Liver',
(int) 108 => 'Lung',
(int) 109 => 'Muscle',
(int) 110 => 'Ovary',
(int) 111 => 'Placenta',
(int) 112 => 'Testis',
(int) 113 => 'Adipose',
(int) 114 => 'Adrenal',
(int) 115 => 'Brain',
(int) 116 => 'Breast',
(int) 117 => 'Colon',
(int) 118 => 'Heart',
(int) 119 => 'Kidney',
(int) 120 => 'Liver',
(int) 121 => 'Lung',
(int) 122 => 'Ovary',
(int) 123 => 'Placenta',
(int) 124 => 'Testis',
(int) 125 => 'Adipose',
(int) 126 => 'Bladder',
(int) 127 => 'Brain',
(int) 128 => 'Breast',
(int) 129 => 'Colon',
(int) 130 => 'Heart',
(int) 131 => 'Kidney',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007KB_0003',
'tax_id' => '7955',
'chromosome' => '2',
'seq_start' => '8446734',
'seq_end' => '8446897',
'region_length' => '163',
'region_type' => 'UCNEbase',
'el_id' => 'AK5'
)
)
$gene_el = array(
'ENSMUST00000068243' => array(
'Adipose' => array(
'average_FPKM' => '0.324',
'stddev_FPKM' => '0.22'
),
'Adrenal' => array(
'average_FPKM' => '4.734',
'stddev_FPKM' => '1.24'
),
'Brain' => array(
'average_FPKM' => '1.195',
'stddev_FPKM' => '0.28'
),
'Breast' => array(
'average_FPKM' => '2.119',
'stddev_FPKM' => '0.32'
),
'Colon' => array(
'average_FPKM' => '2.370',
'stddev_FPKM' => '0.87'
),
'Heart' => array(
'average_FPKM' => '1.152',
'stddev_FPKM' => '0.21'
),
'Kidney' => array(
'average_FPKM' => '2.475',
'stddev_FPKM' => '0.32'
),
'Liver' => array(
'average_FPKM' => '0.359',
'stddev_FPKM' => '0.19'
),
'Lung' => array(
'average_FPKM' => '2.567',
'stddev_FPKM' => '0.63'
),
'Ovary' => array(
'average_FPKM' => '4.261',
'stddev_FPKM' => '1.22'
),
'Placenta' => array(
'average_FPKM' => '1.065',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.798',
'stddev_FPKM' => '0.10'
)
),
'ENSMUST00000073089' => array(
'Adipose' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.86'
),
'Bladder' => array(
'average_FPKM' => '1.599',
'stddev_FPKM' => '0.13'
),
'Brain' => array(
'average_FPKM' => '6.849',
'stddev_FPKM' => '4.44'
),
'Breast' => array(
'average_FPKM' => '0.940',
'stddev_FPKM' => '0.38'
),
'Colon' => array(
'average_FPKM' => '1.091',
'stddev_FPKM' => '0.36'
),
'Heart' => array(
'average_FPKM' => '1.638',
'stddev_FPKM' => '0.60'
),
'Kidney' => array(
'average_FPKM' => '3.274',
'stddev_FPKM' => '0.47'
),
'Liver' => array(
'average_FPKM' => '1.628',
'stddev_FPKM' => '1.37'
),
'Lung' => array(
'average_FPKM' => '3.233',
'stddev_FPKM' => '0.58'
),
'Muscle' => array(
'average_FPKM' => '1.157',
'stddev_FPKM' => '0.38'
),
'Ovary' => array(
'average_FPKM' => '2.655',
'stddev_FPKM' => '0.73'
),
'Placenta' => array(
'average_FPKM' => '4.166',
'stddev_FPKM' => '0.97'
),
'Testis' => array(
'average_FPKM' => '0.617',
'stddev_FPKM' => '0.24'
)
)
)
$gene_key = 'ENSMUSG00000054942'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '1.264',
'stddev_FPKM' => '0.86'
),
'Bladder' => array(
'average_FPKM' => '1.599',
'stddev_FPKM' => '0.13'
),
'Brain' => array(
'average_FPKM' => '6.849',
'stddev_FPKM' => '4.44'
),
'Breast' => array(
'average_FPKM' => '0.940',
'stddev_FPKM' => '0.38'
),
'Colon' => array(
'average_FPKM' => '1.091',
'stddev_FPKM' => '0.36'
),
'Heart' => array(
'average_FPKM' => '1.638',
'stddev_FPKM' => '0.60'
),
'Kidney' => array(
'average_FPKM' => '3.274',
'stddev_FPKM' => '0.47'
),
'Liver' => array(
'average_FPKM' => '1.628',
'stddev_FPKM' => '1.37'
),
'Lung' => array(
'average_FPKM' => '3.233',
'stddev_FPKM' => '0.58'
),
'Muscle' => array(
'average_FPKM' => '1.157',
'stddev_FPKM' => '0.38'
),
'Ovary' => array(
'average_FPKM' => '2.655',
'stddev_FPKM' => '0.73'
),
'Placenta' => array(
'average_FPKM' => '4.166',
'stddev_FPKM' => '0.97'
),
'Testis' => array(
'average_FPKM' => '0.617',
'stddev_FPKM' => '0.24'
)
)
$tran_key = 'ENSMUST00000073089'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(ZZZ3)