C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077312 SNRPA 9606 + 19:40750637-40765389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243563 SNRPA-001 40750859-40765389 protein_coding
  ENST00000596860 SNRPA-012 40763541-40765208 retained_intron
  ENST00000597353 SNRPA-011 40750868-40762920 protein_coding
  ENST00000598452 SNRPA-004 40757036-40759640 retained_intron
  ENST00000598923 SNRPA-010 40751274-40763291 retained_intron
  ENST00000599362 SNRPA-009 40750871-40759610 protein_coding
  ENST00000599570 SNRPA-007 40750875-40759610 processed_transcript
  ENST00000600456 SNRPA-005 40751298-40759579 nonsense_mediated_decay
  ENST00000601253 SNRPA-008 40750867-40759579 protein_coding
  ENST00000601393 SNRPA-006 40751209-40765150 protein_coding
  ENST00000601545 SNRPA-003 40750637-40765021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000243563ENST00000596860ENST00000597353ENST00000599570ENST00000601393ENST00000601545
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000243563 37.046±0.00 2.753±0.00 10.797±7.25 2.932±0.00 4.539±3.54 19.480±0.00 5.313±2.73 8.543±0.00 21.461±13.52 22.572±5.13 21.174±5.68
ENST00000596860 N/A N/A N/A N/A N/A N/A N/A 26.880±0.00 17.281±0.00 N/A N/A
ENST00000597353 N/A N/A N/A N/A N/A N/A N/A 5.290±0.00 N/A N/A N/A
ENST00000599570 N/A N/A N/A N/A 1.163±0.00 1.752±0.00 N/A N/A N/A N/A N/A
ENST00000601393 N/A N/A N/A 20.773±0.00 N/A N/A N/A 17.393±0.00 N/A N/A N/A
ENST00000601545 N/A N/A N/A N/A N/A N/A N/A 3.964±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA:IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0017069 IEA snRNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018890 snrpa small nuclear ribonucleoprotein polypeptide A protein_coding Danio_rerio
ENSMUSG00000061479 Snrpa small nuclear ribonucleoprotein polypeptide A protein_coding Mus_musculus
ENSMUSG00000071273 Gm5145 predicted pseudogene 5145 protein_coding Mus_musculus

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