C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061479 Snrpa 10090 - 7:27187005-27196271 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080356 Snrpa-001 27187007-27196271 protein_coding
  ENSMUST00000122202 Snrpa-002 27187007-27196245 protein_coding
  ENSMUST00000126211 Snrpa-003 27187327-27195760 protein_coding
  ENSMUST00000141378 Snrpa-004 27191714-27196024 nonsense_mediated_decay
  ENSMUST00000148491 Snrpa-005 27187005-27189014 retained_intron
  ENSMUST00000163311 Snrpa-201 27187007-27195760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080356ENSMUST00000122202ENSMUST00000126211ENSMUST00000148491ENSMUST00000163311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080356 34.994±7.17 57.297±9.38 31.821±2.50 35.636±23.48 44.035±7.17 42.639±6.81 19.531±3.57 33.919±3.91 26.780±9.42 35.900±2.85 7.430±1.04 63.395±26.30 28.022±14.66 27.639±7.72
ENSMUST00000122202 21.769±1.42 38.791±4.71 20.621±0.17 28.631±14.61 24.314±3.36 25.714±4.19 10.641±3.28 18.117±1.36 16.543±8.03 20.446±1.14 4.788±0.97 35.226±12.75 17.471±6.56 19.687±9.86
ENSMUST00000126211 16.565±0.62 N/A 18.492±0.00 36.273±31.35 12.929±1.32 17.981±0.00 N/A N/A 22.035±14.48 N/A 4.581±0.00 70.462±46.44 13.043±4.06 N/A
ENSMUST00000148491 N/A N/A N/A N/A 19.222±0.00 N/A N/A N/A N/A N/A N/A N/A 9.927±0.00 N/A
ENSMUST00000163311 N/A 17.248±0.00 N/A 38.361±19.96 N/A N/A N/A N/A 17.643±6.80 N/A 4.161±0.93 16.492±1.06 8.265±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZN CIL_0002ZN_0002 CGP 7:27187005-27205386

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005681 ISS spliceosomal complex
GO:0005685 ISS U1 snRNP
GO:0017069 IEA snRNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018890 snrpa small nuclear ribonucleoprotein polypeptide A protein_coding Danio_rerio
ENSG00000077312 SNRPA small nuclear ribonucleoprotein polypeptide A protein_coding Homo_sapiens

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