C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243563 SNRPA-001 ENSG00000077312 9606 + 19:40750859-40765389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000243563
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000243563 37.046±0.00 2.753±0.00 10.797±7.25 2.932±0.00 4.539±3.54 19.480±0.00 5.313±2.73 8.543±0.00 21.461±13.52 22.572±5.13 21.174±5.68

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA:IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005685 IDA U1 snRNP
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0017069 IEA snRNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163311 Snrpa-201 protein_coding Mus_musculus 0 1197
ENSMUST00000080356 Snrpa-001 protein_coding Mus_musculus 0 1181
ENSMUST00000122202 Snrpa-002 protein_coding Mus_musculus 0 1181
ENSMUST00000075243 Gm5161-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000076538 Gm8587-201 processed_pseudogene Mus_musculus 0 931
ENSMUST00000190584 RP23-192P10.1-001 processed_pseudogene Mus_musculus 0 896
ENSMUST00000126211 Snrpa-003 protein_coding Mus_musculus 0 894
ENSMUST00000095633 Gm5145-201 protein_coding Mus_musculus 0 841
ENSDART00000012018 snrpa-201 protein_coding Danio_rerio 0 477
ENSMUST00000148491 Snrpa-005 retained_intron Mus_musculus 0 472
ENSMUST00000141378 Snrpa-004 nonsense_mediated_decay Mus_musculus 0 311

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