C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and calponin homology (CH) domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077454 LRCH4 9606 - 7:100574011-100586153 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310300 LRCH4-001 100574660-100586153 protein_coding
  ENST00000467201 LRCH4-003 100574660-100580873 retained_intron
  ENST00000470184 LRCH4-008 100581637-100582453 retained_intron
  ENST00000476881 LRCH4-005 100574709-100577100 retained_intron
  ENST00000485554 LRCH4-012 100574011-100576943 protein_coding
  ENST00000485583 LRCH4-007 100582138-100586129 retained_intron
  ENST00000487697 LRCH4-009 100577846-100578739 retained_intron
  ENST00000490359 LRCH4-011 100575957-100577095 retained_intron
  ENST00000497245 LRCH4-002 100575063-100585120 protein_coding
  ENST00000498539 LRCH4-010 100576985-100577884 retained_intron
  ENST00000619071 LRCH4-201 100574660-100582350 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310300ENST00000467201ENST00000470184ENST00000476881ENST00000485554ENST00000497245ENST00000619071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310300 6.186±0.00 18.855±0.00 N/A 1.710±1.47 8.392±0.00 4.101±0.00 3.876±3.56 11.766±0.00 3.462±2.24 8.553±0.00 20.083±0.00 24.235±10.20 21.943±9.12 47.859±7.16
ENST00000467201 N/A N/A 0.074±0.00 0.245±0.00 0.584±0.00 N/A 0.083±0.00 0.362±0.00 N/A N/A 0.117±0.00 0.278±0.00 N/A N/A
ENST00000470184 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.048±0.00 N/A N/A N/A N/A
ENST00000476881 N/A N/A 0.282±0.00 0.339±0.00 N/A N/A N/A N/A N/A 0.773±0.00 0.389±0.00 1.085±0.00 N/A N/A
ENST00000485554 N/A N/A N/A N/A N/A N/A N/A 0.857±0.00 N/A N/A N/A N/A N/A N/A
ENST00000497245 N/A N/A N/A 1.783±0.00 N/A N/A N/A 0.792±0.00 N/A 0.706±0.00 N/A 5.777±0.00 2.931±0.00 20.172±6.08
ENST00000619071 N/A N/A N/A 0.424±0.00 2.432±0.00 1.622±0.00 N/A N/A 0.800±0.00 N/A 0.921±0.00 8.595±5.65 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0007399 TAS nervous system development
GO:0016605 IDA PML body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068258 lrch4 leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Danio_rerio
ENSDARG00000086385 LRCH4 (2 of 2) leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Danio_rerio
ENSMUSG00000029720 Gm20605 predicted gene 20605 protein_coding Mus_musculus
ENSMUSG00000093445 Lrch4 leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Mus_musculus

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