C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich repeats and calponin homology (CH) domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000093445 Lrch4 10090 + 5:137629121-137641099 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031734 Lrch4-001 137629121-137641094 protein_coding
  ENSMUST00000175968 Lrch4-003 137630130-137640180 protein_coding
  ENSMUST00000176011 Lrch4-007 137629178-137633887 nonsense_mediated_decay
  ENSMUST00000176667 Lrch4-002 137629178-137641099 protein_coding
  ENSMUST00000176768 Lrch4-008 137639366-137640239 protein_coding
  ENSMUST00000176871 Lrch4-004 137638320-137639363 protein_coding
  ENSMUST00000176988 Lrch4-005 137629143-137636799 retained_intron
  ENSMUST00000177477 Lrch4-006 137629152-137637614 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031734ENSMUST00000175968ENSMUST00000176667ENSMUST00000176988
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031734 8.067±1.15 15.935±1.47 4.533±0.00 4.438±0.88 16.409±5.46 16.411±3.90 5.902±1.79 11.543±1.12 3.774±0.46 18.464±2.40 4.577±0.66 11.215±1.69 5.264±3.03 35.457±14.38
ENSMUST00000175968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.341±0.49
ENSMUST00000176667 N/A N/A N/A N/A 31.393±1.44 N/A N/A N/A 8.341±1.38 N/A N/A N/A N/A N/A
ENSMUST00000176988 N/A N/A N/A N/A N/A 37.616±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TF CIL_0000TF_0002 CGP 5:137629121-137642899

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068258 lrch4 leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Danio_rerio
ENSDARG00000086385 LRCH4 (2 of 2) leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Danio_rerio
ENSG00000077454 LRCH4 leucine-rich repeats and calponin homology (CH) domain containing 4 protein_coding Homo_sapiens

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