C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeats and calponin homology (CH) domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310300 LRCH4-001 ENSG00000077454 9606 - 7:100574660-100586153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310300
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310300 6.186±0.00 18.855±0.00 1.710±1.47 8.392±0.00 4.101±0.00 3.876±3.56 11.766±0.00 3.462±2.24 8.553±0.00 20.083±0.00 24.235±10.20 21.943±9.12 47.859±7.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0007399 TAS nervous system development
GO:0016605 IDA PML body

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031734 Lrch4-001 protein_coding Mus_musculus 0 2097
ENSMUST00000177545 Gm20605-001 nonsense_mediated_decay Mus_musculus 0 2078
ENSMUST00000176667 Lrch4-002 protein_coding Mus_musculus 0 1842
ENSMUST00000175968 Lrch4-003 protein_coding Mus_musculus 0 1775
ENSMUST00000177477 Lrch4-006 nonsense_mediated_decay Mus_musculus 0 736
ENSMUST00000176988 Lrch4-005 retained_intron Mus_musculus 0 678
ENSMUST00000176011 Lrch4-007 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000176768 Lrch4-008 protein_coding Mus_musculus 0 226

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