C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jade family PHD finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077684 JADE1 9606 + 4:128809623-128875224 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000226319 JADE1-201 128809623-128875224 protein_coding
  ENST00000413543 JADE1-001 128811326-128864630 protein_coding
  ENST00000452328 JADE1-003 128809815-128875224 protein_coding
  ENST00000503785 JADE1-007 128809920-128849072 protein_coding
  ENST00000504089 JADE1-005 128809844-128849093 protein_coding
  ENST00000507833 JADE1-009 128811844-128849078 protein_coding
  ENST00000508997 JADE1-010 128831433-128849040 protein_coding
  ENST00000510308 JADE1-006 128811288-128849112 protein_coding
  ENST00000511647 JADE1-002 128809703-128864081 protein_coding
  ENST00000511925 JADE1-011 128811292-128852128 nonsense_mediated_decay
  ENST00000512960 JADE1-004 128809919-128872334 protein_coding
  ENST00000514740 JADE1-008 128810031-128831811 protein_coding
  ENST00000610919 JADE1-202 128811270-128875224 protein_coding
  ENST00000611140 JADE1-203 128811844-128875224 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226319ENST00000452328ENST00000511647ENST00000512960ENST00000610919ENST00000611140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226319 N/A N/A 1.102±0.00 N/A 2.548±0.00 N/A N/A N/A 4.060±0.00 N/A N/A 1.184±0.00 N/A N/A
ENST00000452328 N/A 6.733±0.00 N/A N/A 10.125±0.00 N/A 1.210±0.72 1.733±0.00 1.602±0.00 N/A 1.554±1.15 2.951±0.00 4.106±0.00 2.188±0.13
ENST00000511647 N/A N/A 1.709±0.00 4.428±0.00 N/A 3.002±0.00 N/A N/A N/A 5.500±1.47 N/A 5.264±2.46 4.382±1.61 5.358±0.57
ENST00000512960 N/A N/A 2.005±0.00 N/A N/A N/A 0.849±0.00 N/A 6.056±0.00 N/A 1.639±0.00 2.302±0.00 N/A N/A
ENST00000610919 17.632±0.00 N/A N/A N/A 5.805±0.00 10.169±0.00 2.345±0.00 N/A N/A N/A N/A 6.842±0.00 1.902±0.00 3.353±0.00
ENST00000611140 N/A 5.753±0.00 N/A N/A N/A 10.774±0.00 2.105±1.47 13.977±0.00 0.689±0.00 5.399±0.59 1.617±0.00 N/A N/A 3.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0001 CGP 4:128269237-128875224
CIL_00001M CIL_00001M_0001 CGP 4:128809623-129093607

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000123 IDA histone acetyltransferase complex
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006915 NAS apoptotic process
GO:0006950 NAS response to stress
GO:0008270 IEA zinc ion binding
GO:0030308 NAS negative regulation of cell growth
GO:0043966 IDA histone H3 acetylation
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043983 IDA histone H4-K12 acetylation
GO:0045171 IDA intercellular bridge
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:2000134 IDA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033707 jade1 jade family PHD finger 1 protein_coding Danio_rerio
ENSMUSG00000025764 Jade1 jade family PHD finger 1 protein_coding Mus_musculus

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