C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jade family PHD finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452328 JADE1-003 ENSG00000077684 9606 + 4:128809815-128875224 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000452328
Transcript ID Adrenal Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000452328 6.733±0.00 10.125±0.00 1.210±0.72 1.733±0.00 1.602±0.00 1.554±1.15 2.951±0.00 4.106±0.00 2.188±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0001 CGP 4:128269237-128875224
CIL_00001M CIL_00001M_0001 CGP 4:128809623-129093607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 IDA histone acetyltransferase complex
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006915 NAS apoptotic process
GO:0006950 NAS response to stress
GO:0008270 IEA zinc ion binding
GO:0030308 NAS negative regulation of cell growth
GO:0043966 IDA histone H3 acetylation
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043983 IDA histone H4-K12 acetylation
GO:0045171 IDA intercellular bridge
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:2000134 IDA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168086 Jade1-203 protein_coding Mus_musculus 0 2885
ENSMUST00000163764 Jade1-202 protein_coding Mus_musculus 0 2885
ENSMUST00000026865 Jade1-201 protein_coding Mus_musculus 0 2885
ENSMUST00000170711 Jade1-204 protein_coding Mus_musculus 0 2673

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