C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jade family PHD finger 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025764 Jade1 10090 + 3:41555734-41616862 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026865 Jade1-201 41555734-41616862 protein_coding
  ENSMUST00000163764 Jade1-202 41563383-41616862 protein_coding
  ENSMUST00000168086 Jade1-203 41564880-41616862 protein_coding
  ENSMUST00000170711 Jade1-204 41563751-41616862 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026865ENSMUST00000163764ENSMUST00000168086ENSMUST00000170711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026865 N/A N/A N/A N/A 0.534±0.00 N/A N/A N/A 0.819±0.33 N/A N/A 9.652±0.67 23.300±10.42 1.067±0.54
ENSMUST00000163764 4.699±0.69 5.782±2.68 5.082±0.04 1.882±0.78 3.750±1.96 3.682±1.57 2.916±0.38 5.674±0.75 2.150±1.04 3.818±0.60 2.674±0.96 5.120±0.75 18.076±0.00 1.045±0.48
ENSMUST00000168086 0.583±0.00 0.809±0.00 N/A 1.413±0.83 0.846±0.28 1.114±0.46 N/A N/A 0.811±0.29 N/A 0.812±0.00 1.478±0.94 7.257±2.23 0.630±0.08
ENSMUST00000170711 1.255±0.52 1.982±0.38 1.369±0.11 1.805±0.47 1.541±0.74 0.837±0.04 0.854±0.08 1.794±0.48 1.064±0.39 1.017±0.19 1.787±0.74 1.558±0.52 N/A 0.751±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0002 CGP 3:41066326-41616862
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043966 ISS histone H3 acetylation
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043983 ISS histone H4-K12 acetylation
GO:0045171 IEA intercellular bridge
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033707 jade1 jade family PHD finger 1 protein_coding Danio_rerio
ENSG00000077684 JADE1 jade family PHD finger 1 protein_coding Homo_sapiens

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