C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00001N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164040-ENSG00000077684 CGP 9606 4:128269237-128875224
GeneTranscriptPositionBiotype
ENSG00000077684 (JADE1)
jade family PHD finger 1 		ENST00000226319 (JADE1-201) 128809623-128875224 protein_coding
ENST00000413543 (JADE1-001) 128811326-128864630 protein_coding
ENST00000452328 (JADE1-003) 128809815-128875224 protein_coding
ENST00000503785 (JADE1-007) 128809920-128849072 protein_coding
ENST00000504089 (JADE1-005) 128809844-128849093 protein_coding
ENST00000507833 (JADE1-009) 128811844-128849078 protein_coding
ENST00000508997 (JADE1-010) 128831433-128849040 protein_coding
ENST00000510308 (JADE1-006) 128811288-128849112 protein_coding
ENST00000511647 (JADE1-002) 128809703-128864081 protein_coding
ENST00000511925 (JADE1-011) 128811292-128852128 nonsense_mediated_decay
ENST00000512960 (JADE1-004) 128809919-128872334 protein_coding
ENST00000514740 (JADE1-008) 128810031-128831811 protein_coding
ENST00000610919 (JADE1-202) 128811270-128875224 protein_coding
ENST00000611140 (JADE1-203) 128811844-128875224 protein_coding
ENSG00000151466 (SCLT1)
sodium channel and clathrin linker 1 		ENST00000281142 (SCLT1-001) 128883993-129093607 protein_coding
ENST00000439369 (SCLT1-004) 128884346-129093410 protein_coding
ENST00000502495 (SCLT1-007) 128884390-128997285 processed_transcript
ENST00000503215 (SCLT1-005) 128884346-129093412 protein_coding
ENST00000503401 (SCLT1-002) 129039230-129093563 protein_coding
ENST00000503565 (SCLT1-009) 128864921-128936704 processed_transcript
ENST00000506233 (SCLT1-006) 128883997-128972372 retained_intron
ENST00000506368 (SCLT1-008) 129036595-129093377 protein_coding
ENST00000511426 (SCLT1-003) 129039193-129093545 protein_coding
ENSG00000164040 (PGRMC2)
progesterone receptor membrane component 2 		ENST00000296425 (PGRMC2-007) 128269242-128287811 protein_coding
ENST00000394276 (PGRMC2-002) 128269256-128273061 protein_coding
ENST00000503588 (PGRMC2-005) 128270871-128286787 protein_coding
ENST00000503872 (PGRMC2-004) 128270705-128286878 protein_coding
ENST00000509070 (PGRMC2-006) 128271359-128287388 nonsense_mediated_decay
ENST00000512483 (PGRMC2-003) 128270612-128288203 protein_coding
ENST00000520121 (PGRMC2-001) 128269242-128288829 protein_coding
ENST00000613358 (PGRMC2-201) 128269237-128288822 protein_coding
ENSG00000248187 (RP11-184M15.1)
 ENST00000514265 (RP11-184M15.1-001) 128567972-128570531 lincRNA
ENSG00000248802 (RP11-184M15.2)
 ENST00000487657 (RP11-184M15.2-002) 128582999-128601400 lincRNA
ENST00000509360 (RP11-184M15.2-001) 128599439-128601407 lincRNA
ENSG00000251432 (RP11-420A23.1)
 ENST00000504984 (RP11-420A23.1-002) 128455169-128470647 lincRNA
ENST00000505133 (RP11-420A23.1-005) 128292751-128466661 lincRNA
ENST00000509834 (RP11-420A23.1-004) 128292933-128474996 lincRNA
ENST00000511497 (RP11-420A23.1-001) 128428070-128519394 lincRNA
ENST00000513851 (RP11-420A23.1-003) 128470506-128471080 lincRNA
ENSG00000273077 (RP11-130C6.1)
 ENST00000608228 (RP11-130C6.1-001) 128552590-128553416 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00001N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049940-ENSMUSG00000025764 CGP 10090 3:41066326-41616862
GeneTranscriptPositionBiotype
ENSMUSG00000025764 (Jade1)
jade family PHD finger 1 		ENSMUST00000026865 (Jade1-201) 41555734-41616862 protein_coding
ENSMUST00000163764 (Jade1-202) 41563383-41616862 protein_coding
ENSMUST00000168086 (Jade1-203) 41564880-41616862 protein_coding
ENSMUST00000170711 (Jade1-204) 41563751-41616862 protein_coding
ENSMUSG00000049940 (Pgrmc2)
progesterone receptor membrane component 2 		ENSMUST00000058578 (Pgrmc2-001) 41066326-41083046 protein_coding
ENSMUST00000124636 (Pgrmc2-002) 41068520-41070670 retained_intron
ENSMUSG00000097639 (C430002E04Rik)
RIKEN cDNA C430002E04 gene 		ENSMUST00000181833 (C430002E04Rik-201) 41488804-41493192 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001N_0001ENSG00000077684ENST00000226319ENST00000452328ENST00000511647ENST00000512960ENST00000610919ENST00000611140ENSG00000151466ENST00000281142ENST00000503215ENSG00000164040ENST00000296425ENST00000394276ENST00000503588ENST00000503872ENST00000512483ENST00000520121ENSG00000248187ENST00000514265ENSG00000248802ENST00000487657ENST00000509360ENSG00000251432ENST00000504984ENST00000505133ENST00000509834ENST00000511497ENST00000513851ENSG00000273077ENST00000608228CIL_00001N_0002ENSMUSG00000025764ENSMUST00000026865ENSMUST00000163764ENSMUST00000168086ENSMUST00000170711ENSMUSG00000049940ENSMUST00000058578ENSMUST00000124636ENSMUSG00000097639ENSMUST00000181833
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077684 ENST00000226319 N/A N/A 1.102±0.00 N/A 2.548±0.00 N/A N/A N/A 4.060±0.00 N/A N/A 1.184±0.00 N/A N/A
ENST00000413543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452328 N/A 6.733±0.00 N/A N/A 10.125±0.00 N/A 1.210±0.72 1.733±0.00 1.602±0.00 N/A 1.554±1.15 2.951±0.00 4.106±0.00 2.188±0.13
ENST00000503785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511647 N/A N/A 1.709±0.00 4.428±0.00 N/A 3.002±0.00 N/A N/A N/A 5.500±1.47 N/A 5.264±2.46 4.382±1.61 5.358±0.57
ENST00000511925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512960 N/A N/A 2.005±0.00 N/A N/A N/A 0.849±0.00 N/A 6.056±0.00 N/A 1.639±0.00 2.302±0.00 N/A N/A
ENST00000514740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610919 17.632±0.00 N/A N/A N/A 5.805±0.00 10.169±0.00 2.345±0.00 N/A N/A N/A N/A 6.842±0.00 1.902±0.00 3.353±0.00
ENST00000611140 N/A 5.753±0.00 N/A N/A N/A 10.774±0.00 2.105±1.47 13.977±0.00 0.689±0.00 5.399±0.59 1.617±0.00 N/A N/A 3.019±0.00
ENSG00000151466 ENST00000281142 N/A N/A N/A N/A 2.005±0.00 2.188±0.00 N/A N/A 2.670±0.00 2.887±0.00 N/A 2.578±0.51 2.627±0.00 3.856±0.00
ENST00000439369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503215 N/A N/A N/A N/A 4.773±0.00 N/A 1.197±0.00 N/A N/A N/A 1.032±0.00 N/A N/A N/A
ENST00000503401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164040 ENST00000296425 39.928±0.00 12.072±0.00 1.032±0.00 5.874±3.27 21.802±20.43 12.069±9.67 6.548±5.54 12.202±7.86 7.908±5.81 7.483±6.47 6.478±0.00 10.705±8.57 25.881±7.06 9.885±5.23
ENST00000394276 N/A N/A 1.100±0.00 N/A 1.507±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.412±0.00 89.609±0.00 31.788±0.00
ENST00000503872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.547±0.00 N/A 15.314±0.00
ENST00000509070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512483 38.071±0.00 7.663±0.00 4.095±0.00 7.711±0.00 17.244±13.32 17.127±12.47 6.798±4.72 15.039±4.32 9.786±3.53 15.767±0.00 9.293±0.00 5.807±2.59 20.065±0.54 13.128±0.00
ENST00000520121 N/A N/A N/A N/A N/A N/A N/A N/A 0.887±0.00 N/A N/A N/A N/A N/A
ENST00000613358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248187 ENST00000514265 0.108±0.00 0.020±0.00 N/A N/A 0.149±0.00 0.249±0.00 0.080±0.00 0.519±0.00 0.017±0.00 0.051±0.00 N/A 0.081±0.07 0.298±0.19 0.029±0.00
ENSG00000248802 ENST00000487657 0.167±0.00 0.532±0.00 N/A 0.504±0.00 0.259±0.00 0.271±0.00 0.132±0.00 0.183±0.00 0.125±0.00 0.271±0.14 0.062±0.00 N/A 0.130±0.00 0.180±0.05
ENST00000509360 N/A N/A N/A N/A N/A N/A N/A 1.061±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000251432 ENST00000504984 0.224±0.00 N/A N/A 0.482±0.00 0.826±0.00 N/A 0.157±0.00 N/A 0.022±0.00 N/A N/A N/A 0.227±0.14 N/A
ENST00000505133 N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A 1.635±0.00 N/A N/A
ENST00000509834 N/A N/A 0.550±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.269±0.00
ENST00000511497 0.036±0.00 0.086±0.00 0.089±0.00 N/A 0.078±0.00 0.125±0.05 0.101±0.04 0.186±0.00 0.009±0.00 N/A N/A 0.144±0.02 0.192±0.00 0.610±0.00
ENST00000513851 N/A N/A N/A 0.262±0.00 0.701±0.00 N/A 0.095±0.00 N/A 0.092±0.00 5.664±0.00 N/A N/A N/A N/A
ENSG00000273077 ENST00000608228 N/A 0.058±0.00 N/A N/A 0.059±0.00 0.439±0.00 0.281±0.00 0.294±0.00 N/A N/A N/A 0.174±0.00 N/A 0.214±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025764 ENSMUST00000026865 N/A N/A N/A N/A 0.534±0.00 N/A N/A N/A 0.819±0.33 N/A N/A 9.652±0.67 23.300±10.42 1.067±0.54
ENSMUST00000163764 4.699±0.69 5.782±2.68 5.082±0.04 1.882±0.78 3.750±1.96 3.682±1.57 2.916±0.38 5.674±0.75 2.150±1.04 3.818±0.60 2.674±0.96 5.120±0.75 18.076±0.00 1.045±0.48
ENSMUST00000168086 0.583±0.00 0.809±0.00 N/A 1.413±0.83 0.846±0.28 1.114±0.46 N/A N/A 0.811±0.29 N/A 0.812±0.00 1.478±0.94 7.257±2.23 0.630±0.08
ENSMUST00000170711 1.255±0.52 1.982±0.38 1.369±0.11 1.805±0.47 1.541±0.74 0.837±0.04 0.854±0.08 1.794±0.48 1.064±0.39 1.017±0.19 1.787±0.74 1.558±0.52 N/A 0.751±0.38
ENSMUSG00000049940 ENSMUST00000058578 21.424±1.65 39.205±6.35 17.063±0.28 9.866±2.87 25.682±12.08 17.925±1.96 7.119±0.83 15.837±3.25 14.525±5.42 19.694±5.00 6.679±0.92 34.196±12.73 17.007±3.73 17.269±10.75
ENSMUST00000124636 N/A N/A N/A 25.229±0.00 N/A N/A N/A N/A N/A N/A N/A 36.354±0.00 36.807±3.33 68.990±0.00
ENSMUSG00000097639 ENSMUST00000181833 N/A N/A 0.008±0.00 0.008±0.00 0.127±0.00 0.159±0.00 N/A N/A 0.095±0.08 N/A 0.041±0.00 N/A 3.639±1.87 0.092±0.04

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