C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pericentriolar material 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078674 PCM1 9606 + 8:17922840-18029944 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325083 PCM1-001 17922840-18027968 protein_coding
  ENST00000327578 PCM1-201 17922857-18029944 protein_coding
  ENST00000517545 PCM1-006 17922990-17927953 retained_intron
  ENST00000517730 PCM1-002 17922990-17960103 protein_coding
  ENST00000517836 PCM1-012 17957658-17962213 retained_intron
  ENST00000518537 PCM1-005 17922999-17955955 protein_coding
  ENST00000518762 PCM1-014 17960094-17964770 processed_transcript
  ENST00000518877 PCM1-020 18013882-18025611 retained_intron
  ENST00000518930 PCM1-009 17922968-17953035 processed_transcript
  ENST00000518936 PCM1-008 17923006-17937321 processed_transcript
  ENST00000518985 PCM1-010 17937176-17939016 processed_transcript
  ENST00000519253 PCM1-003 17923028-18027803 protein_coding
  ENST00000519802 PCM1-023 18013828-18027758 retained_intron
  ENST00000521338 PCM1-022 18006054-18009665 retained_intron
  ENST00000522275 PCM1-016 17972583-18027747 protein_coding
  ENST00000522777 PCM1-015 17980221-17983281 retained_intron
  ENST00000522998 PCM1-024 17972673-17986263 retained_intron
  ENST00000523055 PCM1-007 17923010-17953123 protein_coding
  ENST00000523540 PCM1-011 17969423-17972642 retained_intron
  ENST00000523896 PCM1-017 18024951-18027758 retained_intron
  ENST00000524203 PCM1-019 18013988-18015795 processed_transcript
  ENST00000524226 PCM1-004 17924744-18027975 protein_coding
  ENST00000524356 PCM1-013 17962953-17966035 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325083ENST00000327578ENST00000517730ENST00000519253ENST00000522275ENST00000524226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325083 3.070±0.00 N/A 4.016±0.00 4.907±0.00 1.884±0.00 6.866±0.63 N/A N/A 5.571±4.65 8.052±0.00 5.969±0.00 6.041±2.95 2.154±1.11 N/A
ENST00000327578 3.069±0.00 4.010±0.00 2.143±0.00 4.044±0.00 2.574±0.00 3.145±0.00 N/A 1.478±0.00 2.161±1.36 4.067±0.00 6.281±0.00 N/A N/A N/A
ENST00000517730 N/A N/A N/A N/A N/A N/A N/A 5.830±0.00 N/A N/A N/A N/A N/A N/A
ENST00000519253 4.415±0.00 2.383±0.00 2.687±0.00 4.992±0.19 6.439±3.15 5.496±1.59 7.353±3.23 4.376±0.95 4.097±2.51 6.570±1.77 23.923±0.00 3.729±0.83 2.628±1.97 53.155±26.71
ENST00000522275 5.261±0.00 10.703±0.00 N/A N/A 8.744±0.00 N/A 7.844±0.00 8.614±0.00 4.917±0.00 3.843±0.00 33.984±0.00 12.248±4.32 9.219±9.28 111.170±61.94
ENST00000524226 N/A N/A N/A N/A 2.309±0.00 N/A 3.462±0.00 N/A N/A 1.289±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EN CIL_0004EN_0001 CGP 8:17864380-18029944
CIL_000072 CIL_000072_0002 CGP 8:17922840-18084985

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000242 ISS pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005813 ISS centrosome
GO:0005829 TAS cytosol
GO:0016020 IDA membrane
GO:0022027 ISS interkinetic nuclear migration
GO:0031122 IMP cytoplasmic microtubule organization
GO:0031965 IDA nuclear membrane
GO:0034451 IDA centriolar satellite
GO:0034453 ISS microtubule anchoring
GO:0034454 IEA microtubule anchoring at centrosome
GO:0035735 IMP intraciliary transport involved in cilium morphogenesis
GO:0036064 IEA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0042802 ISS identical protein binding
GO:0043234 IDA protein complex
GO:0050768 ISS negative regulation of neurogenesis
GO:0051297 IMP centrosome organization
GO:0071539 ISS protein localization to centrosome
GO:0090316 IMP positive regulation of intracellular protein transport
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062198 pcm1 pericentriolar material 1 protein_coding Danio_rerio
ENSMUSG00000031592 Pcm1 pericentriolar material 1 protein_coding Mus_musculus

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