C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pericentriolar material 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325083 PCM1-001 ENSG00000078674 9606 + 8:17922840-18027968 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungMuscleOvaryPlacentaENST00000325083
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENST00000325083 3.070±0.00 4.016±0.00 4.907±0.00 1.884±0.00 6.866±0.63 5.571±4.65 8.052±0.00 5.969±0.00 6.041±2.95 2.154±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EN CIL_0004EN_0001 CGP 8:17864380-18029944
CIL_000072 CIL_000072_0002 CGP 8:17922840-18084985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000242 ISS pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005813 ISS centrosome
GO:0005829 TAS cytosol
GO:0016020 IDA membrane
GO:0022027 ISS interkinetic nuclear migration
GO:0031122 IMP cytoplasmic microtubule organization
GO:0031965 IDA nuclear membrane
GO:0034451 IDA centriolar satellite
GO:0034453 ISS microtubule anchoring
GO:0034454 IEA microtubule anchoring at centrosome
GO:0035735 IMP intraciliary transport involved in cilium morphogenesis
GO:0036064 IEA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0042802 ISS identical protein binding
GO:0043234 IDA protein complex
GO:0050768 ISS negative regulation of neurogenesis
GO:0051297 IMP centrosome organization
GO:0071539 ISS protein localization to centrosome
GO:0090316 IMP positive regulation of intracellular protein transport
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045218 Pcm1-201 protein_coding Mus_musculus 0 7516

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