C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 6C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078687 TNRC6C 9606 + 17:78004168-78108835 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301624 TNRC6C-201 78005056-78108835 protein_coding
  ENST00000335749 TNRC6C-202 78005056-78108835 protein_coding
  ENST00000585438 TNRC6C-007 78031522-78067910 protein_coding
  ENST00000587990 TNRC6C-009 78064894-78075385 retained_intron
  ENST00000588061 TNRC6C-002 78004168-78107464 protein_coding
  ENST00000588549 TNRC6C-004 78041047-78049349 protein_coding
  ENST00000588847 TNRC6C-001 78004168-78107464 protein_coding
  ENST00000591851 TNRC6C-003 78051067-78077779 retained_intron
  ENST00000592251 TNRC6C-008 78091367-78093299 retained_intron
  ENST00000592566 TNRC6C-006 78098342-78102821 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588061ENST00000588847
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588061 N/A N/A N/A N/A N/A N/A 0.499±0.00 0.696±0.06 1.631±0.00 N/A 2.087±0.00 N/A 1.462±0.00
ENST00000588847 5.834±0.00 9.616±0.00 6.134±4.70 4.059±2.98 2.069±1.22 1.698±1.05 3.468±0.00 0.698±0.16 1.641±0.00 1.991±1.34 3.868±3.18 1.024±0.00 4.818±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_00009V CIL_00009V_0001 CGP 17:78004168-78132407

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IEA endoderm formation
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0007492 IEA endoderm development
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0035162 IEA embryonic hemopoiesis
GO:0035278 TAS negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0048568 IEA embryonic organ development
GO:0060213 IDA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060964 IEA regulation of gene silencing by miRNA
GO:1900153 IDA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076356 TNRC6C (1 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSDARG00000076847 TNRC6C (2 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSDARG00000078036 TNRC6C (3 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSMUSG00000025571 Tnrc6c trinucleotide repeat containing 6C protein_coding Mus_musculus

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