C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 6C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025571 Tnrc6c 10090 + 11:117654289-117763439 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026658 Tnrc6c-201 117654289-117763437 protein_coding
  ENSMUST00000106344 Tnrc6c-001 117654813-117763439 protein_coding
  ENSMUST00000138299 Tnrc6c-003 117721018-117762264 protein_coding
  ENSMUST00000140347 Tnrc6c-005 117742501-117749301 retained_intron
  ENSMUST00000141115 Tnrc6c-004 117654573-117763428 retained_intron
  ENSMUST00000141287 Tnrc6c-002 117749231-117751308 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026658ENSMUST00000106344ENSMUST00000138299ENSMUST00000141115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026658 1.090±0.00 1.418±0.08 N/A 4.737±1.73 3.990±0.60 N/A N/A 0.812±0.17 0.772±0.13 2.464±1.07 N/A N/A N/A 2.299±0.43
ENSMUST00000106344 3.534±1.60 0.740±0.00 0.823±0.21 4.022±1.34 1.744±0.00 4.720±2.25 2.390±0.11 1.141±0.00 0.695±0.19 1.443±0.31 1.010±0.34 3.477±1.90 1.266±0.12 3.427±0.31
ENSMUST00000138299 4.463±1.54 N/A 2.465±0.52 13.398±2.44 2.919±1.24 N/A 2.332±0.91 1.474±0.54 1.488±0.62 2.881±1.19 2.720±0.25 4.724±1.68 2.711±0.98 5.141±1.19
ENSMUST00000141115 N/A N/A 0.564±0.00 2.474±0.42 N/A N/A N/A N/A 0.271±0.07 0.704±0.00 0.416±0.00 0.906±0.00 0.312±0.08 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00009V CIL_00009V_0002 CGP 11:117654289-117782198

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IMP endoderm formation
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006417 IEA regulation of translation
GO:0007492 IMP endoderm development
GO:0031047 IEA gene silencing by RNA
GO:0035162 IMP embryonic hemopoiesis
GO:0048568 IMP embryonic organ development
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060964 IMP regulation of gene silencing by miRNA
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076356 TNRC6C (1 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSDARG00000076847 TNRC6C (2 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSDARG00000078036 TNRC6C (3 of 3) trinucleotide repeat containing 6C protein_coding Danio_rerio
ENSG00000078687 TNRC6C trinucleotide repeat containing 6C protein_coding Homo_sapiens

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