C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588847 TNRC6C-001 ENSG00000078687 9606 + 17:78004168-78107464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588847
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588847 5.834±0.00 9.616±0.00 6.134±4.70 4.059±2.98 2.069±1.22 1.698±1.05 3.468±0.00 0.698±0.16 1.641±0.00 1.991±1.34 3.868±3.18 1.024±0.00 4.818±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0001 VISTA 17:77940736-78544976
CIL_00009V CIL_00009V_0001 CGP 17:78004168-78132407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0035278 TAS negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0060213 IDA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IDA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026658 Tnrc6c-201 protein_coding Mus_musculus 0 6307
ENSMUST00000106344 Tnrc6c-001 protein_coding Mus_musculus 0 6307
ENSMUST00000138299 Tnrc6c-003 protein_coding Mus_musculus 0 5906
ENSMUST00000141115 Tnrc6c-004 retained_intron Mus_musculus 0 5565
ENSDART00000113726 TNRC6C (2 of 3)-201 protein_coding Danio_rerio 0 660
ENSDART00000151634 TNRC6C (2 of 3)-001 protein_coding Danio_rerio 0 660
ENSMUST00000141287 Tnrc6c-002 retained_intron Mus_musculus 0 494
ENSMUST00000140347 Tnrc6c-005 retained_intron Mus_musculus 0 484
ENSMUST00000067689 Tnrc6b-201 protein_coding Mus_musculus 2e-28 134

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