C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 8 (all-trans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080511 RDH8 9606 + 19:10013249-10022279 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000587782 RDH8-002 10020761-10022070 protein_coding
  ENST00000589570 RDH8-003 10017166-10021088 retained_intron
  ENST00000591589 RDH8-001 10013249-10022279 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverOvaryPlacentaTestisENST00000587782ENST00000589570ENST00000591589
Transcript ID Adrenal Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000587782 N/A N/A N/A 0.243±0.00 N/A 0.096±0.00 0.083±0.00 0.890±0.15
ENST00000589570 0.332±0.00 0.163±0.00 0.102±0.00 0.748±0.00 0.090±0.00 0.085±0.00 N/A 0.265±0.08
ENST00000591589 0.025±0.00 N/A 0.138±0.00 0.508±0.00 N/A 0.016±0.00 N/A 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077H CIL_00077H_0002 CGP 19:9959561-10022279
CIL_0004G7 CIL_0004G7_0001 CGP 19:10013249-10093252

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004303 IEA estradiol 17-beta-dehydrogenase activity
GO:0004745 IEA retinol dehydrogenase activity
GO:0005737 IEA cytoplasm
GO:0005887 TAS integral component of plasma membrane
GO:0006694 TAS steroid biosynthetic process
GO:0006703 IEA estrogen biosynthetic process
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0016491 IEA oxidoreductase activity
GO:0042572 IEA retinol metabolic process
GO:0052650 IEA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013695 rdh8b retinol dehydrogenase 8b protein_coding Danio_rerio
ENSDARG00000028048 rdh8a retinol dehydrogenase 8a protein_coding Danio_rerio
ENSMUSG00000053773 Rdh8 retinol dehydrogenase 8 protein_coding Mus_musculus

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